Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020916.1 Corchorus olitorius cultivar O-4 contig20949, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2000
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30


Found at i:1635 original size:18 final size:18

Alignment explanation


    Indices: 1612--1657  Score: 56
    Period size: 18  Copynumber: 2.6  Consensus size: 18

       1602 TGAAATTAAT

                              
       1612 TAATTATTAATTAAATAA
          1 TAATTATTAATTAAATAA

                    **  *     
       1630 TAATTATTTTTTGAATAA
          1 TAATTATTAATTAAATAA

             *        
       1648 TTATTATTAA
          1 TAATTATTAA

       1658 ATTTCTAGTG


Statistics
Matches: 22,  Mismatches: 6, Indels: 0
        0.79            0.21        0.00

Matches are distributed among these distances:
  18   22  1.00

ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52


Consensus pattern (18 bp):   
TAATTATTAATTAAATAA
Done.