Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020917.1 Corchorus olitorius cultivar O-4 contig20950, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20975

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29--130
51
2.0
50
83
9
127
22
23
12
41
1.88
4019--4043
13
1.9
13
100
0
50
48
0
20
32
1.50
6002--6030
2
14.5
2
100
0
58
48
0
0
51
1.00
15610--15677
21
3.2
21
89
0
100
35
25
14
25
1.94
15593--15677
42
2.0
42
81
0
98
34
24
14
27
1.94
15745--15864
21
5.7
21
88
0
168
35
22
14
27
1.93
15741--15864
42
3.0
42
92
0
203
37
21
13
27
1.91
15745--15864
63
1.9
63
89
0
186
35
22
14
27
1.93
15925--16049
21
6.0
21
92
0
187
37
22
12
27
1.90
15592--16104
185
2.8
183
88
4
735
35
22
12
29
1.91
20405--20429
13
1.9
13
100
0
50
48
4
8
40
1.51

Tables:   1

The End!