Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020924.1 Corchorus olitorius cultivar O-4 contig20957, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2163
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.37


Found at i:68 original size:20 final size:20

Alignment explanation


    Indices: 42--98  Score: 71
    Period size: 20  Copynumber: 2.9  Consensus size: 20

         32 TATTATAAGT

                                
         42 ATTTTTAGTAACCTTATTAA
          1 ATTTTTAGTAACCTTATTAA

            *              *    
         62 GTTTTTAGTAA-CTTTTTAA
          1 ATTTTTAGTAACCTTATTAA

                       *      
         81 ATATTTTAGTATCCTTAT
          1 AT-TTTTAGTAACCTTAT

         99 ATATTTTCTC


Statistics
Matches: 30,  Mismatches: 5, Indels: 3
        0.79            0.13        0.08

Matches are distributed among these distances:
  19    8  0.27
  20   18  0.60
  21    4  0.13

ACGTcount: A:0.30, C:0.09, G:0.07, T:0.54


Consensus pattern (20 bp):   
ATTTTTAGTAACCTTATTAA
Done.