genome.fa.s20927.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020927.1 Corchorus olitorius cultivar O-4 contig20960, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131642

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1035--1059	8	3.1	8	100	0	50	36	24	0	40	1.55
2645--2684	10	4.1	10	96	3	73	50	32	10	7	1.64
3678--3764	43	2.0	44	93	2	149	44	10	18	26	1.81
3683--3750	20	3.2	20	67	18	57	47	10	16	26	1.78
4509--4565	16	3.6	16	79	13	64	3	17	47	31	1.65
4509--4581	31	2.3	32	83	2	85	4	17	45	32	1.68
4523--4641	16	7.7	15	73	13	89	5	14	40	39	1.70
4524--4637	32	3.7	32	80	8	119	6	14	41	38	1.70
4653--4687	17	2.1	17	88	0	52	5	22	42	28	1.76
4632--4688	23	2.5	23	80	8	62	8	21	40	29	1.83
4816--4862	12	3.8	12	78	13	51	57	4	0	38	1.18
5116--5187	31	2.3	33	75	18	82	61	9	4	25	1.45
5638--5676	17	2.3	17	86	8	53	7	25	46	20	1.77
8860--8902	21	2.0	21	100	0	86	37	9	9	44	1.69
9949--10044	50	1.9	49	89	2	147	55	20	6	17	1.64
10958--11092	57	2.4	57	87	5	200	59	6	9	24	1.53
11080--11121	20	2.3	19	88	12	61	59	9	4	26	1.48
13379--13590	106	2.0	106	98	0	406	36	12	23	27	1.91
22983--24008	44	23.9	44	68	14	266	36	8	17	37	1.81
23032--23329	66	4.6	65	74	5	251	37	10	16	35	1.83
22985--23330	22	15.9	22	75	10	221	35	10	17	36	1.83
23341--24008	22	30.9	22	67	11	249	36	8	17	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23543--23593	21	2.4	21	86	3	66	47	5	9	37	1.61
23733--23770	19	2.0	19	90	10	60	42	2	15	39	1.61
23716--23852	41	3.3	40	75	14	118	39	7	16	36	1.77
24002--24054	22	2.3	23	81	12	65	47	3	15	33	1.63
24967--25079	55	2.0	55	89	1	172	54	9	11	23	1.65
27412--27436	12	2.1	12	100	0	50	36	24	8	32	1.84
28446--28482	9	3.9	9	86	13	56	2	10	32	54	1.49
29055--29082	14	2.0	14	100	0	56	57	21	7	14	1.61
30301--30333	7	4.7	7	100	0	66	12	12	60	15	1.59
35788--35823	18	2.0	18	100	0	72	33	38	0	27	1.57
37847--37872	12	2.2	12	100	0	52	26	38	7	26	1.83
43068--43197	27	5.1	24	88	6	143	21	14	23	40	1.90
43077--43183	27	4.1	27	87	7	148	20	15	23	40	1.91
43077--43183	51	2.0	51	85	5	142	20	15	23	40	1.91
48783--48821	20	2.1	18	90	9	60	64	0	33	2	1.08
50750--50776	13	2.1	13	100	0	54	25	22	0	51	1.48
53596--53708	22	5.1	23	69	15	62	41	6	12	39	1.68
53609--53708	22	4.5	21	70	8	74	41	6	11	42	1.65
54746--54856	55	2.0	55	94	0	195	18	25	21	35	1.95
55842--56007	89	1.8	92	92	3	284	36	9	13	40	1.77
72298--72334	19	1.9	19	94	0	65	37	21	10	29	1.88
76319--76361	22	2.0	21	86	4	59	46	34	0	18	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80344--80405	30	2.1	30	90	0	97	24	22	6	46	1.75
81381--81412	4	7.8	4	93	6	55	21	0	0	78	0.76
89755--89781	2	13.5	2	100	0	54	0	48	0	51	1.00
89817--90078	107	2.5	105	91	2	411	40	8	9	41	1.67
97024--97091	29	2.3	29	87	9	102	17	26	16	39	1.90
119266--119340	30	2.6	30	80	4	91	44	16	21	18	1.87
120994--121052	31	1.9	31	82	0	73	55	16	6	20	1.63
127210--127290	42	1.9	42	92	0	135	45	14	8	30	1.75
130711--130772	26	2.3	26	76	13	81	48	9	0	41	1.36
131265--131310	24	1.9	24	95	0	83	21	21	4	52	1.64

Tables:   1

The End!