Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002093.1 Corchorus olitorius cultivar O-4 contig02093, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 672

Length: 1120
ACGTcount: A:0.34, C:0.17, G:0.10, T:0.39


Found at i:983 original size:56 final size:56

Alignment explanation


    Indices: 916--1029  Score: 212
    Period size: 56  Copynumber: 2.0  Consensus size: 56

        906 TATCTGTTTC

                                                                     
        916 CTTTCACACAATAAATGTTATAATAAATT-CTATCCCCCTATCTCTACTTAATTATT
          1 CTTTCACACAATAAATGTTATAAT-AATTCCTATCCCCCTATCTCTACTTAATTATT

                                                                    
        972 CTTTCACACAATAAATGTTATAATAATTCCTATCCCCCTATCTCTACTTAATTATT
          1 CTTTCACACAATAAATGTTATAATAATTCCTATCCCCCTATCTCTACTTAATTATT

              
       1028 CT
          1 CT

       1030 ACAAAACTAA


Statistics
Matches: 57,  Mismatches: 0, Indels: 2
        0.97            0.00        0.03

Matches are distributed among these distances:
  55    4  0.07
  56   53  0.93

ACGTcount: A:0.32, C:0.25, G:0.02, T:0.41


Consensus pattern (56 bp):   
CTTTCACACAATAAATGTTATAATAATTCCTATCCCCCTATCTCTACTTAATTATT
Done.