Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020937.1 Corchorus olitorius cultivar O-4 contig20970, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 22825
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32


Found at i:3908 original size:13 final size:13

Alignment explanation


    Indices: 3890--3916  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

       3880 TAAACGAACA

                         
       3890 CTAAATTTTTGTT
          1 CTAAATTTTTGTT

                         
       3903 CTAAATTTTTGTT
          1 CTAAATTTTTGTT

             
       3916 C
          1 C

       3917 GAGTTCGTTC


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.22, C:0.11, G:0.07, T:0.59


Consensus pattern (13 bp):   
CTAAATTTTTGTT
Done.