Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020938.1 Corchorus olitorius cultivar O-4 contig20971, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 649

Length: 1083
ACGTcount: A:0.39, C:0.13, G:0.12, T:0.36


Found at i:599 original size:6 final size:6

Alignment explanation


    Indices: 588--621  Score: 68
    Period size: 6  Copynumber: 5.7  Consensus size: 6

        578 AAAAGATAAA

                                                   
        588 ATTGGT ATTGGT ATTGGT ATTGGT ATTGGT ATTG
          1 ATTGGT ATTGGT ATTGGT ATTGGT ATTGGT ATTG

        622 TAGATATCCA


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   28  1.00

ACGTcount: A:0.18, C:0.00, G:0.32, T:0.50


Consensus pattern (6 bp):   
ATTGGT

Done.