Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020940.1 Corchorus olitorius cultivar O-4 contig20973, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14193
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32


Found at i:9497 original size:27 final size:27

Alignment explanation


    Indices: 9467--9520  Score: 99
    Period size: 27  Copynumber: 2.0  Consensus size: 27

       9457 ACATATACTA

                *                      
       9467 CTATTATCAATGGATTGTGTAGTGAGG
          1 CTATGATCAATGGATTGTGTAGTGAGG

                                       
       9494 CTATGATCAATGGATTGTGTAGTGAGG
          1 CTATGATCAATGGATTGTGTAGTGAGG

       9521 GATTGGTTGA


Statistics
Matches: 26,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  27   26  1.00

ACGTcount: A:0.26, C:0.07, G:0.31, T:0.35


Consensus pattern (27 bp):   
CTATGATCAATGGATTGTGTAGTGAGG

Found at i:10302 original size:20 final size:20

Alignment explanation


    Indices: 10277--10316  Score: 80
    Period size: 20  Copynumber: 2.0  Consensus size: 20

      10267 AGACTCGAAA

                                
      10277 CTGACTCGAAAAAACTGACT
          1 CTGACTCGAAAAAACTGACT

                                
      10297 CTGACTCGAAAAAACTGACT
          1 CTGACTCGAAAAAACTGACT

      10317 GACTCAAACT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.40, C:0.25, G:0.15, T:0.20


Consensus pattern (20 bp):   
CTGACTCGAAAAAACTGACT
Done.