Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020947.1 Corchorus olitorius cultivar O-4 contig20980, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15037

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
971--1116
59
2.6
56
85
10
192
23
23
2
50
1.62
1005--1038
12
2.7
13
81
9
52
14
23
0
61
1.33
1011--1131
59
2.1
59
98
0
233
24
22
2
50
1.61
1088--1128
21
1.9
22
95
5
75
29
21
4
43
1.73
1151--1268
35
3.1
39
74
15
106
27
17
0
53
1.50
1151--1268
18
6.3
19
76
15
120
27
17
0
53
1.50
1289--1447
31
5.3
31
71
20
149
27
16
0
55
1.46
1269--1485
32
7.2
32
65
20
137
25
17
0
56
1.44
1439--2177
51
15.2
47
80
12
586
23
18
0
57
1.42
1552--1785
28
9.1
23
69
19
135
24
15
0
58
1.43
1439--1836
45
7.9
51
90
5
500
24
17
0
57
1.44
1234--1836
59
11.5
52
88
8
581
25
17
0
56
1.44
1570--1931
78
4.5
81
76
19
325
24
16
0
59
1.41
1234--1836
156
3.9
151
77
18
471
25
17
0
56
1.44
1810--2175
48
7.3
49
77
14
268
22
18
0
58
1.39
1840--1931
23
3.7
23
73
18
85
23
18
0
57
1.40
1832--2177
147
2.3
140
86
9
392
22
18
0
58
1.39
1810--2177
99
3.7
99
82
13
436
22
18
0
58
1.39
1944--2036
18
5.5
17
70
23
72
23
20
0
55
1.43
2042--2168
22
5.2
22
72
23
103
21
16
0
62
1.33
2109--2166
29
2.0
28
83
10
71
18
15
0
65
1.27
10966--10991
1
26.0
1
100
0
52
100
0
0
0
0.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13597--14107
68
7.6
68
86
5
641
22
18
14
44
1.86

Tables:   1

The End!