Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020948.1 Corchorus olitorius cultivar O-4 contig20981, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5937

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4840--4905
20
3.2
20
72
12
62
30
16
0
53
1.44
4851--4966
18
6.2
19
72
16
89
26
15
0
56
1.45
4848--4938
40
2.2
40
79
14
98
26
16
1
56
1.48
4959--5062
30
3.6
30
72
15
101
22
18
0
58
1.45
4926--5686
48
15.6
48
79
15
743
24
16
0
57
1.42
4956--5077
56
2.1
60
84
9
162
22
17
0
59
1.43
4991--5071
30
2.8
29
79
3
90
23
17
0
59
1.38
5048--5127
20
3.8
20
71
23
65
25
21
0
53
1.46
5068--5162
27
3.9
27
70
23
91
22
18
0
58
1.39
5096--5135
18
2.2
18
95
0
71
22
20
0
57
1.41
4940--5663
244
3.0
238
78
17
820
24
16
0
57
1.42
5262--5338
36
2.1
37
92
2
129
27
18
1
53
1.52
5319--5397
23
3.3
22
74
17
77
21
15
1
62
1.40
5370--5421
19
2.7
19
82
8
61
26
15
0
57
1.38
5370--5408
20
2.0
20
90
5
62
28
15
0
56
1.40
5013--5686
143
4.7
147
83
12
773
25
16
0
57
1.42
5513--5641
20
6.4
20
69
24
85
22
17
0
59
1.37
5588--5858
81
3.2
80
80
15
321
24
16
0
58
1.41
5645--5724
38
2.1
38
95
0
142
26
16
1
56
1.48
5615--5937
95
3.6
91
78
17
311
24
17
0
57
1.42
5319--5777
247
1.9
242
85
10
597
25
16
0
58
1.42
5790--5829
21
2.0
21
95
5
64
27
15
0
57
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5764--5937
52
3.6
47
87
9
226
25
17
0
56
1.40

Tables:   1

The End!