Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01020958.1 Corchorus olitorius cultivar O-4 contig20991, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21311
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
Found at i:443 original size:23 final size:23
Alignment explanation
Indices: 417--462 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
407 TGCTACACAC
*
417 TTTAGAGGAGGAAACAAAATTGA
1 TTTAGAGAAGGAAACAAAATTGA
440 TTTAGAGAAGGAAACAAAATTGA
1 TTTAGAGAAGGAAACAAAATTGA
463 AGCTATTGCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.50, C:0.04, G:0.24, T:0.22
Consensus pattern (23 bp):
TTTAGAGAAGGAAACAAAATTGA
Found at i:7740 original size:99 final size:99
Alignment explanation
Indices: 7430--8473 Score: 1474
Period size: 99 Copynumber: 10.5 Consensus size: 99
7420 TTTCAGAGAA
** * *
7430 ACCTTAGCCTTCGATCCGGACTCCCCGTGAGAACATCGAGACTAAGTTGGCCTAACGTAAGCCCT
1 ACCTTAGATTTCGATCCGGACTCCCCGTGAGAACATCGAAACTAAGTTGGCCGAACGTAAGCCCT
*
7495 GGACTCTTTGTGAGAACGACTAAGTTCGTAATTG
66 GGACTCTTTGTGAGAACGGCTAAGTTCGTAATTG
** * *
7529 ACCTTAGATTTCGATCCGGACTCGTCATGAGAACATCGAAACTAAGTTGTGGCTGAACGTAAGCC
1 ACCTTAGATTTCGATCCGGACTCCCCGTGAGAACATCGAAACTAAG-T-TGGCCGAACGTAAGCC
* *
7594 CT-GAGCTCTTTGTGAGAATGGCTAAGTTCGTATTTG
64 CTGGA-CTCTTTGTGAGAACGGCTAAGTTCGTAATTG
* *
7630 ACCTTAGATTTCGATCCGGACTCCCCGTGAGAACATCGAAACTAAGTTGGTCGAACGTAAGCGCT
1 ACCTTAGATTTCGATCCGGACTCCCCGTGAGAACATCGAAACTAAGTTGGCCGAACGTAAGCCCT
*
7695 GGACTCTTTGTGAGAATGGCTAAGTTCGTAATT-
66 GGACTCTTTGTGAGAACGGCTAAGTTCGTAATTG
* * *
7728 AGCCTTAGATTTCGATCCGGACTCCCCGTGAGAACATCCAAACTAAGTTGGCCAAACATAAGCCC
1 A-CCTTAGATTTCGATCCGGACTCCCCGTGAGAACATCGAAACTAAGTTGGCCGAACGTAAGCCC
*
7793 TGGACTCTTTGTGAGAACGGCTAAGTTCGTATTTG
65 TGGACTCTTTGTGAGAACGGCTAAGTTCGTAATTG
7828 ACCTTAGATTTCGATCCGGACTCCCCGTGAGAACATCGAAACTAAGTTGGCCGAACGTAAGCCCT
1 ACCTTAGATTTCGATCCGGACTCCCCGTGAGAACATCGAAACTAAGTTGGCCGAACGTAAGCCCT
* * *
7893 GGACTTTTTGTAAGAACGAC-AACGTTCGTAATTG
66 GGACTCTTTGTGAGAACGGCTAA-GTTCGTAATTG
7927 ACCTTAGATTTCGATCCGGACTCCCCGTGAGAACATCGAAACTAAGTTGTGGCCGAACGTGAA-C
1 ACCTTAGATTTCGATCCGGACTCCCCGTGAGAACATCGAAACTAAG-T-TGGCCGAACGT-AAGC
*
7991 CCTGGACTCTTTGTAAGAACGGC-AACGTTCGTAATTG
63 CCTGGACTCTTTGTGAGAACGGCTAA-GTTCGTAATTG
** * * *
8028 ACCTTAGATTTCGATCCGGACTCGTCATGAGAACATCGAAACTAAATTGGCCGAACGTAAGCCCC
1 ACCTTAGATTTCGATCCGGACTCCCCGTGAGAACATCGAAACTAAGTTGGCCGAACGTAAGCCCT
* *
8093 GAACTCTTTGTGAGAACGGC-AACGTTTGTAATTG
66 GGACTCTTTGTGAGAACGGCTAA-GTTCGTAATTG
* * *
8127 ACCTTAGATTTCGATTCGGACTCCCCGTGAGAACATCGAAACTAAGTTGTGGTCGAACGTAAGCG
1 ACCTTAGATTTCGATCCGGACTCCCCGTGAGAACATCGAAACTAAG-T-TGGCCGAACGTAAGCC
* *
8192 CTAGACTTTTTGTGAGAACGGCTAAGTTCGTAATT-
64 CTGGACTCTTTGTGAGAACGGCTAAGTTCGTAATTG
* * *
8227 AGCCTTAGATTTCGATCCGGACTCCCCGTGAGAACATCGAATCTAAGTTGGCCGAACATGAGCCC
1 A-CCTTAGATTTCGATCCGGACTCCCCGTGAGAACATCGAAACTAAGTTGGCCGAACGTAAGCCC
* *
8292 TGGACTCTTTGTGAGAACGGCAAAGTTCGTATTTG
65 TGGACTCTTTGTGAGAACGGCTAAGTTCGTAATTG
* *
8327 ACCTTAGATTTCGATCCAGACTCCCCGTGAGAACATCGAAATTAAGTTGGCCGAACGTAAGCCCT
1 ACCTTAGATTTCGATCCGGACTCCCCGTGAGAACATCGAAACTAAGTTGGCCGAACGTAAGCCCT
* *
8392 GGACTTTTTGTAAGAACGGCTAAGTTCGTAATT-
66 GGACTCTTTGTGAGAACGGCTAAGTTCGTAATTG
* ** * *
8425 AGCCTTAAATTTCGATCCGGACTCGTCATGAGAACATTGAAACTAAGTT
1 A-CCTTAGATTTCGATCCGGACTCCCCGTGAGAACATCGAAACTAAGTT
8474 ATGATTGAAC
Statistics
Matches: 848, Mismatches: 80, Indels: 34
0.88 0.08 0.04
Matches are distributed among these distances:
98 6 0.01
99 565 0.67
100 13 0.02
101 260 0.31
102 4 0.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (99 bp):
ACCTTAGATTTCGATCCGGACTCCCCGTGAGAACATCGAAACTAAGTTGGCCGAACGTAAGCCCT
GGACTCTTTGTGAGAACGGCTAAGTTCGTAATTG
Found at i:8512 original size:200 final size:201
Alignment explanation
Indices: 7430--8473 Score: 1502
Period size: 200 Copynumber: 5.2 Consensus size: 201
7420 TTTCAGAGAA
** * *
7430 ACCTTAGCCTTCGATCCGGACTCCCCGTGAGAACATCGAGACTAAGTTGGCCTAACGTAAGCCCT
1 ACCTTAGATTTCGATCCGGACTCCCCGTGAGAACATCGAAACTAAGTTGGCCGAACGTAAGCCCT
* * ** *
7495 GGACTCTTTGTGAGAACGACTAAGTTCGTAATTGACCTTAGATTTCGATCCGGACTCGTCATGAG
66 GGACTCTTTGTGAGAACGGCAAAGTTCGTAATTGACCTTAGATTTCGATCCGGACTCCCCGTGAG
* *
7560 AACATCGAAACTAAGTTGTGGCTGAACGTAAGCCCT-GAGCTCTTTGTGAGAATGGCTAAGTTCG
131 AACATCGAAACTAAGTTGTGGCCGAACGTAAGCCCTGGA-CTCTTTGTGAGAACGGCTAAGTTCG
*
7624 T-ATTTG
195 TAATTAG
* *
7630 ACCTTAGATTTCGATCCGGACTCCCCGTGAGAACATCGAAACTAAGTTGGTCGAACGTAAGCGCT
1 ACCTTAGATTTCGATCCGGACTCCCCGTGAGAACATCGAAACTAAGTTGGCCGAACGTAAGCCCT
* *
7695 GGACTCTTTGTGAGAATGGCTAAGTTCGTAATT-AGCCTTAGATTTCGATCCGGACTCCCCGTGA
66 GGACTCTTTGTGAGAACGGCAAAGTTCGTAATTGA-CCTTAGATTTCGATCCGGACTCCCCGTGA
* * *
7759 GAACATCCAAACTAAG-T-TGGCCAAACATAAGCCCTGGACTCTTTGTGAGAACGGCTAAGTTCG
130 GAACATCGAAACTAAGTTGTGGCCGAACGTAAGCCCTGGACTCTTTGTGAGAACGGCTAAGTTCG
*
7822 T-ATTTG
195 TAATTAG
7828 ACCTTAGATTTCGATCCGGACTCCCCGTGAGAACATCGAAACTAAGTTGGCCGAACGTAAGCCCT
1 ACCTTAGATTTCGATCCGGACTCCCCGTGAGAACATCGAAACTAAGTTGGCCGAACGTAAGCCCT
* * * *
7893 GGACTTTTTGTAAGAACGACAACGTTCGTAATTGACCTTAGATTTCGATCCGGACTCCCCGTGAG
66 GGACTCTTTGTGAGAACGGCAAAGTTCGTAATTGACCTTAGATTTCGATCCGGACTCCCCGTGAG
*
7958 AACATCGAAACTAAGTTGTGGCCGAACGTGAA-CCCTGGACTCTTTGTAAGAACGGC-AACGTTC
131 AACATCGAAACTAAGTTGTGGCCGAACGT-AAGCCCTGGACTCTTTGTGAGAACGGCTAA-GTTC
8021 GTAATT-G
194 GTAATTAG
** * * *
8028 ACCTTAGATTTCGATCCGGACTCGTCATGAGAACATCGAAACTAAATTGGCCGAACGTAAGCCCC
1 ACCTTAGATTTCGATCCGGACTCCCCGTGAGAACATCGAAACTAAGTTGGCCGAACGTAAGCCCT
* * * *
8093 GAACTCTTTGTGAGAACGGCAACGTTTGTAATTGACCTTAGATTTCGATTCGGACTCCCCGTGAG
66 GGACTCTTTGTGAGAACGGCAAAGTTCGTAATTGACCTTAGATTTCGATCCGGACTCCCCGTGAG
* * * *
8158 AACATCGAAACTAAGTTGTGGTCGAACGTAAGCGCTAGACTTTTTGTGAGAACGGCTAAGTTCGT
131 AACATCGAAACTAAGTTGTGGCCGAACGTAAGCCCTGGACTCTTTGTGAGAACGGCTAAGTTCGT
8223 AATTAG
196 AATTAG
* * *
8229 -CCTTAGATTTCGATCCGGACTCCCCGTGAGAACATCGAATCTAAGTTGGCCGAACATGAGCCCT
1 ACCTTAGATTTCGATCCGGACTCCCCGTGAGAACATCGAAACTAAGTTGGCCGAACGTAAGCCCT
* *
8293 GGACTCTTTGTGAGAACGGCAAAGTTCGTATTTGACCTTAGATTTCGATCCAGACTCCCCGTGAG
66 GGACTCTTTGTGAGAACGGCAAAGTTCGTAATTGACCTTAGATTTCGATCCGGACTCCCCGTGAG
* * *
8358 AACATCGAAATTAAG-T-TGGCCGAACGTAAGCCCTGGACTTTTTGTAAGAACGGCTAAGTTCGT
131 AACATCGAAACTAAGTTGTGGCCGAACGTAAGCCCTGGACTCTTTGTGAGAACGGCTAAGTTCGT
8421 AATTAG
196 AATTAG
* ** * *
8427 -CCTTAAATTTCGATCCGGACTCGTCATGAGAACATTGAAACTAAGTT
1 ACCTTAGATTTCGATCCGGACTCCCCGTGAGAACATCGAAACTAAGTT
8474 ATGATTGAAC
Statistics
Matches: 764, Mismatches: 69, Indels: 24
0.89 0.08 0.03
Matches are distributed among these distances:
198 269 0.35
199 11 0.01
200 476 0.62
201 8 0.01
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (201 bp):
ACCTTAGATTTCGATCCGGACTCCCCGTGAGAACATCGAAACTAAGTTGGCCGAACGTAAGCCCT
GGACTCTTTGTGAGAACGGCAAAGTTCGTAATTGACCTTAGATTTCGATCCGGACTCCCCGTGAG
AACATCGAAACTAAGTTGTGGCCGAACGTAAGCCCTGGACTCTTTGTGAGAACGGCTAAGTTCGT
AATTAG
Found at i:8512 original size:299 final size:298
Alignment explanation
Indices: 7430--8473 Score: 1508
Period size: 299 Copynumber: 3.5 Consensus size: 298
7420 TTTCAGAGAA
** * *
7430 ACCTTAGCCTTCGATCCGGACTCCCCGTGAGAACATCGAGACTAAGTTGGCCTAACGTAAGCCCT
1 ACCTTAGATTTCGATCCGGACTCCCCGTGAGAACATCGAAACTAAGTTGGCCGAACGTAAGCCCT
* **
7495 GGACTCTTTGTGAGAACGACTAAGTTCGTAATTGACCTTAGATTTCGATCCGGACTCGTCATGAG
66 GGACTCTTTGTGAGAACGGCTAAGTTCGTAATTGACCTTAGATTTCGATCCGGACTCCCCATGAG
* *
7560 AACATCGAAACTAAGTTGTGGCTGAACGTAAGCCCTGAGCTCTTTGTGAGAATGGCTAAGTTCGT
131 AACATCGAAACTAAGTTGTGGCCGAACGTAAGCCCTGA-CTCTTTGTGAGAACGGCTAAGTTCGT
* * *
7625 ATTTGACCTTAGATTTCGATCCGGACTCCCCGTGAGAACATCGAAACTAAGTTGGTCGAACGTAA
195 AATTGACCTTAGATTTCGATCCGGACTCCCCGTGAGAACATCGAAACTAAGTTGGCCGAACGTGA
* * *
7690 GCGCTGGACTCTTTGTGAGAATGGCTAAGTTCGTAATT-
260 GCCCTGGACTCTTTGTGAGAACGGCAAAGTTCGTAATTG
* * *
7728 AGCCTTAGATTTCGATCCGGACTCCCCGTGAGAACATCCAAACTAAGTTGGCCAAACATAAGCCC
1 A-CCTTAGATTTCGATCCGGACTCCCCGTGAGAACATCGAAACTAAGTTGGCCGAACGTAAGCCC
* *
7793 TGGACTCTTTGTGAGAACGGCTAAGTTCGTATTTGACCTTAGATTTCGATCCGGACTCCCCGTGA
65 TGGACTCTTTGTGAGAACGGCTAAGTTCGTAATTGACCTTAGATTTCGATCCGGACTCCCCATGA
* * *
7858 GAACATCGAAACTAAG-T-TGGCCGAACGTAAGCCCTGGACTTTTTGTAAGAACGAC-AACGTTC
130 GAACATCGAAACTAAGTTGTGGCCGAACGTAAGCCCT-GACTCTTTGTGAGAACGGCTAA-GTTC
7920 GTAATTGACCTTAGATTTCGATCCGGACTCCCCGTGAGAACATCGAAACTAAGTTGTGGCCGAAC
193 GTAATTGACCTTAGATTTCGATCCGGACTCCCCGTGAGAACATCGAAACTAAG-T-TGGCCGAAC
* * *
7985 GTGAACCCTGGACTCTTTGTAAGAACGGCAACGTTCGTAATTG
256 GTGAGCCCTGGACTCTTTGTGAGAACGGCAAAGTTCGTAATTG
** * * *
8028 ACCTTAGATTTCGATCCGGACTCGTCATGAGAACATCGAAACTAAATTGGCCGAACGTAAGCCCC
1 ACCTTAGATTTCGATCCGGACTCCCCGTGAGAACATCGAAACTAAGTTGGCCGAACGTAAGCCCT
* * * *
8093 GAACTCTTTGTGAGAACGGC-AACGTTTGTAATTGACCTTAGATTTCGATTCGGACTCCCCGTGA
66 GGACTCTTTGTGAGAACGGCTAA-GTTCGTAATTGACCTTAGATTTCGATCCGGACTCCCCATGA
* * *
8157 GAACATCGAAACTAAGTTGTGGTCGAACGTAAGCGCTAGACTTTTTGTGAGAACGGCTAAGTTCG
130 GAACATCGAAACTAAGTTGTGGCCGAACGTAAGCCCT-GACTCTTTGTGAGAACGGCTAAGTTCG
* *
8222 TAATT-AGCCTTAGATTTCGATCCGGACTCCCCGTGAGAACATCGAATCTAAGTTGGCCGAACAT
194 TAATTGA-CCTTAGATTTCGATCCGGACTCCCCGTGAGAACATCGAAACTAAGTTGGCCGAACGT
*
8286 GAGCCCTGGACTCTTTGTGAGAACGGCAAAGTTCGTATTTG
258 GAGCCCTGGACTCTTTGTGAGAACGGCAAAGTTCGTAATTG
* *
8327 ACCTTAGATTTCGATCCAGACTCCCCGTGAGAACATCGAAATTAAGTTGGCCGAACGTAAGCCCT
1 ACCTTAGATTTCGATCCGGACTCCCCGTGAGAACATCGAAACTAAGTTGGCCGAACGTAAGCCCT
* * * **
8392 GGACTTTTTGTAAGAACGGCTAAGTTCGTAATT-AGCCTTAAATTTCGATCCGGACTCGTCATGA
66 GGACTCTTTGTGAGAACGGCTAAGTTCGTAATTGA-CCTTAGATTTCGATCCGGACTCCCCATGA
*
8456 GAACATTGAAACTAAGTT
130 GAACATCGAAACTAAGTT
8474 ATGATTGAAC
Statistics
Matches: 668, Mismatches: 65, Indels: 25
0.88 0.09 0.03
Matches are distributed among these distances:
296 2 0.00
297 86 0.13
298 8 0.01
299 477 0.71
300 6 0.01
301 87 0.13
302 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (298 bp):
ACCTTAGATTTCGATCCGGACTCCCCGTGAGAACATCGAAACTAAGTTGGCCGAACGTAAGCCCT
GGACTCTTTGTGAGAACGGCTAAGTTCGTAATTGACCTTAGATTTCGATCCGGACTCCCCATGAG
AACATCGAAACTAAGTTGTGGCCGAACGTAAGCCCTGACTCTTTGTGAGAACGGCTAAGTTCGTA
ATTGACCTTAGATTTCGATCCGGACTCCCCGTGAGAACATCGAAACTAAGTTGGCCGAACGTGAG
CCCTGGACTCTTTGTGAGAACGGCAAAGTTCGTAATTG
Found at i:12794 original size:2 final size:2
Alignment explanation
Indices: 12783--12823 Score: 57
Period size: 2 Copynumber: 21.0 Consensus size: 2
12773 TATAATGTTA
* *
12783 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT CT TT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
12824 CTGAAATATC
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (2 bp):
AT
Found at i:19163 original size:30 final size:30
Alignment explanation
Indices: 19107--19521 Score: 566
Period size: 30 Copynumber: 13.7 Consensus size: 30
19097 GCTAATATAT
19107 ATTGACACCAGAAGTTGTCAATGGCCTTGCA
1 ATTGACACCAGAAGTTGTC-ATGGCCTTGCA
*
19138 AATGACACCAGAAGTTGTCATGGCCTTGCA
1 ATTGACACCAGAAGTTGTCATGGCCTTGCA
**
19168 ATTGACACCAGAACCTGTCATGGCCTTGCA
1 ATTGACACCAGAAGTTGTCATGGCCTTGCA
*
19198 AATGACACCAGAAGTTGTCATGGCCTTGCA
1 ATTGACACCAGAAGTTGTCATGGCCTTGCA
* *
19228 ATTGACACCAGAAGTTGTCATGGTCTTACA
1 ATTGACACCAGAAGTTGTCATGGCCTTGCA
** *
19258 ATTGACACCAGAAGTTGTCAATGATCTTACA
1 ATTGACACCAGAAGTTGTC-ATGGCCTTGCA
* * *
19289 ATTGACACCAGTAGTTGTCATGGTCTTACA
1 ATTGACACCAGAAGTTGTCATGGCCTTGCA
**
19319 ATTGACACCAGAAGTTGTCATAACCTTGCA
1 ATTGACACCAGAAGTTGTCATGGCCTTGCA
**
19349 ATTGACACCAGAAGTTGTCAATGATCTTGCA
1 ATTGACACCAGAAGTTGTC-ATGGCCTTGCA
* *
19380 ATTGACACCAGAAATTGTCAT-GCTGTTGCA
1 ATTGACACCAGAAGTTGTCATGGC-CTTGCA
**
19410 ATTGACACCAGAAGTTGTCATGTTCTTGCA
1 ATTGACACCAGAAGTTGTCATGGCCTTGCA
*
19440 ATTCACACCAGAAGTTGTCAT-GCTCTTGCA
1 ATTGACACCAGAAGTTGTCATGGC-CTTGCA
19470 ATTGACACCAGAAGTTGTCAT-GCTCTTGCA
1 ATTGACACCAGAAGTTGTCATGGC-CTTGCA
19500 ATTGACACCAGAAGTTGTCATG
1 ATTGACACCAGAAGTTGTCATG
19522 ATTTTACCTT
Statistics
Matches: 346, Mismatches: 32, Indels: 12
0.89 0.08 0.03
Matches are distributed among these distances:
30 273 0.79
31 73 0.21
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (30 bp):
ATTGACACCAGAAGTTGTCATGGCCTTGCA
Found at i:19442 original size:151 final size:150
Alignment explanation
Indices: 19107--19523 Score: 611
Period size: 151 Copynumber: 2.8 Consensus size: 150
19097 GCTAATATAT
** * *
19107 ATTGACACCAGAAGTTGTCAATGGCCTTGCAAATGACACCAGAAGTTGTCATGGCCTTGCAATTG
1 ATTGACACCAGAAGTTGTCAATGATCTTGCAATTGACACCAGAAGTTGTCATGGTCTTGCAATTG
** * **
19172 ACACCAGAACCTGTCATGGCCTTGCAAATGACACCAGAAGTTGTCATGGCCTTGCAATTGACACC
66 ACACCAGAAGTTGTCAT-GCCTTGCAATTGACACCAGAAGTTGTCATGATCTTGCAATTGACACC
* *
19237 AGAAGTTGTCATGGTCTTACA
130 AGAAATTGTCATGCTCTTACA
* * *
19258 ATTGACACCAGAAGTTGTCAATGATCTTACAATTGACACCAGTAGTTGTCATGGTCTTACAATTG
1 ATTGACACCAGAAGTTGTCAATGATCTTGCAATTGACACCAGAAGTTGTCATGGTCTTGCAATTG
*
19323 ACACCAGAAGTTGTCATAACCTTGCAATTGACACCAGAAGTTGTCAATGATCTTGCAATTGACAC
66 ACACCAGAAGTTGTCAT-GCCTTGCAATTGACACCAGAAGTTGTC-ATGATCTTGCAATTGACAC
* *
19388 CAGAAATTGTCATGCTGTTGCA
129 CAGAAATTGTCATGCTCTTACA
* * *
19410 ATTGACACCAGAAGTTGTC-ATGTTCTTGCAATTCACACCAGAAGTTGTCATGCTCTTGCAATTG
1 ATTGACACCAGAAGTTGTCAATGATCTTGCAATTGACACCAGAAGTTGTCATGGTCTTGCAATTG
19474 ACACCAGAAGTTGTCATGCTCTTGCAATTGACACCAGAAGTTGTCATGAT
66 ACACCAGAAGTTGTCATGC-CTTGCAATTGACACCAGAAGTTGTCATGAT
19524 TTTACCTTTC
Statistics
Matches: 239, Mismatches: 25, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
150 6 0.03
151 179 0.75
152 54 0.23
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (150 bp):
ATTGACACCAGAAGTTGTCAATGATCTTGCAATTGACACCAGAAGTTGTCATGGTCTTGCAATTG
ACACCAGAAGTTGTCATGCCTTGCAATTGACACCAGAAGTTGTCATGATCTTGCAATTGACACCA
GAAATTGTCATGCTCTTACA
Done.