Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020960.1 Corchorus olitorius cultivar O-4 contig20993, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56388

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
126--441
127
2.6
123
80
9
353
23
19
19
37
1.94
1256--1365
54
2.0
54
100
0
220
32
21
18
27
1.96
3806--3883
15
5.2
15
76
11
88
12
28
24
34
1.92
3809--3883
30
2.5
30
93
0
123
13
28
25
33
1.93
5090--5177
18
4.9
18
82
0
104
15
20
37
26
1.93
5711--5852
49
3.0
47
82
9
178
52
5
15
26
1.65
12909--12951
22
2.0
22
90
0
68
27
23
25
23
2.00
16635--16685
24
2.1
25
81
3
59
19
5
5
68
1.31
18484--18544
26
2.3
27
88
5
88
27
13
16
42
1.85
21218--22010
35
21.8
35
80
8
691
44
9
17
29
1.81
21219--22010
71
10.9
70
75
12
613
43
9
17
29
1.81
21217--22010
106
7.3
104
79
9
734
43
10
17
28
1.81
21677--22010
36
9.3
36
85
6
360
44
10
17
28
1.81
21554--21797
123
2.0
122
90
5
386
45
9
15
28
1.78
21677--21938
107
2.4
108
89
2
384
43
10
17
28
1.82
21681--21973
107
2.7
105
86
6
333
43
10
17
28
1.82
24064--24113
6
8.5
6
85
12
59
76
18
6
0
0.99
24064--24113
11
4.2
12
87
5
59
76
18
6
0
0.99
24064--24115
17
2.9
18
80
11
63
75
17
7
0
1.03
25003--25216
109
2.0
109
97
0
401
44
14
11
29
1.80
30950--31117
78
2.2
78
87
1
239
54
0
11
33
1.37
32885--32930
25
1.9
24
91
8
76
34
13
6
45
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36467--36511
22
2.0
22
83
8
56
42
11
4
42
1.60
36584--36647
22
2.9
22
83
4
67
29
15
6
48
1.70
36617--36918
22
13.6
22
72
8
96
38
17
10
33
1.84
36614--36918
44
6.8
45
73
8
146
38
17
10
33
1.84
36827--36915
23
3.9
23
77
2
90
38
22
6
32
1.80
37006--37085
22
3.6
22
75
9
83
38
10
10
41
1.72
36984--37085
44
2.3
42
82
12
134
38
10
9
41
1.73
37193--37399
22
9.5
21
69
12
98
35
13
7
42
1.73
37166--37413
88
2.9
83
80
12
232
34
13
8
43
1.75
37166--37399
44
5.4
44
74
14
157
35
13
8
43
1.74
37341--37558
22
9.9
21
65
19
70
35
16
9
38
1.81
37587--37798
22
9.5
22
66
16
80
36
17
10
35
1.84
37590--37798
66
3.1
65
75
11
183
36
17
10
35
1.84
41242--41295
16
3.7
15
80
19
69
66
5
0
27
1.13
41261--41285
12
2.1
12
100
0
50
68
8
0
24
1.16
44556--44595
21
1.9
21
84
0
53
17
25
25
32
1.97
47050--47078
10
3.0
10
95
5
51
20
31
10
37
1.86
47374--47472
31
3.3
31
69
8
87
35
9
21
34
1.85
48561--48608
24
2.0
24
100
0
96
33
29
0
37
1.58
48997--49046
18
3.1
16
78
18
50
66
6
10
18
1.42

Tables:   1

The End!