Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020963.1 Corchorus olitorius cultivar O-4 contig20996, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56977

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
466--505
15
2.6
16
88
4
55
15
10
12
62
1.54
745--821
33
2.4
31
81
12
93
31
9
10
49
1.68
7273--7315
17
2.5
17
100
0
86
11
41
11
34
1.78
8895--8934
21
1.9
21
94
0
71
30
25
12
32
1.92
14324--14370
26
1.9
23
87
12
67
40
4
27
27
1.75
16955--16995
11
3.7
11
81
12
57
29
21
9
39
1.86
16938--16995
22
2.9
19
81
16
73
27
22
10
39
1.86
16952--17007
22
2.5
22
97
0
103
33
21
8
35
1.85
16953--17007
11
5.1
10
75
16
56
34
20
9
36
1.84
17291--17320
16
1.9
15
93
6
51
46
13
3
36
1.60
19353--19383
15
2.0
16
93
6
55
12
25
22
38
1.90
26047--26082
19
1.9
18
88
5
54
25
22
11
41
1.86
28788--28972
69
2.6
70
81
10
209
34
26
20
18
1.96
28852--28989
69
2.0
69
83
7
172
32
25
21
20
1.97
30297--30499
36
5.6
36
87
6
245
36
18
16
28
1.93
30410--30499
34
2.6
34
94
3
153
35
18
15
30
1.92
30300--30499
106
1.9
107
87
6
296
36
19
16
28
1.93
51681--51802
60
2.0
60
96
0
226
24
20
13
41
1.88
54753--54898
33
4.5
31
78
10
123
42
21
8
27
1.82

Tables:   1

The End!