Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020964.1 Corchorus olitorius cultivar O-4 contig20997, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6021
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.31


Found at i:2835 original size:21 final size:21

Alignment explanation


    Indices: 2811--2883  Score: 65
    Period size: 21  Copynumber: 3.4  Consensus size: 21

       2801 GGCTTGGAAT

                                 
       2811 GGTGATGGCACGGGCATGGCC
          1 GGTGATGGCACGGGCATGGCC

                *          * *** 
       2832 GGTGGTGGCACGGGCTTAATC
          1 GGTGATGGCACGGGCATGGCC

                *          *      
       2853 GGTGGTGGCACGGTGAATGGCC
          1 GGTGATGGCACGG-GCATGGCC

               *     
       2875 GGTAATGGC
          1 GGTGATGGC

       2884 TTGGTAGTGG


Statistics
Matches: 39,  Mismatches: 12, Indels: 1
        0.75            0.23        0.02

Matches are distributed among these distances:
  21   29  0.74
  22   10  0.26

ACGTcount: A:0.15, C:0.19, G:0.47, T:0.19


Consensus pattern (21 bp):   
GGTGATGGCACGGGCATGGCC
Done.