Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020965.1 Corchorus olitorius cultivar O-4 contig20998, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30705

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
298--341
22
2.0
22
86
0
61
27
22
25
25
2.00
295--395
52
1.9
52
94
4
177
23
27
24
23
2.00
425--465
21
2.0
21
90
0
64
26
19
29
24
1.98
5672--5712
21
2.0
21
90
9
66
31
24
9
34
1.88
6602--6643
21
2.0
21
95
0
75
21
19
26
33
1.97
7797--7839
22
2.0
22
85
0
59
30
23
20
25
1.99
7794--7898
52
2.0
52
92
0
174
23
26
23
25
2.00
7924--7964
21
2.0
21
85
9
57
26
19
29
24
1.98
9116--9229
50
2.3
50
93
0
201
16
24
20
38
1.92
8472--9798
685
1.9
689
94
0
2356
28
23
16
32
1.95
12917--12959
18
2.3
18
84
4
50
30
18
11
39
1.86
13404--13456
22
2.5
21
73
11
54
62
9
5
22
1.47
18736--18761
13
2.0
13
100
0
52
84
0
15
0
0.62
20248--20301
19
2.6
21
77
19
60
38
18
3
38
1.69
21684--21730
26
1.9
24
87
12
69
27
27
4
40
1.75
22158--22198
21
2.0
21
85
9
57
34
9
26
29
1.88

Tables:   1

The End!