Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020966.1 Corchorus olitorius cultivar O-4 contig20999, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 718

Length: 1198
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.26


Found at i:259 original size:11 final size:11

Alignment explanation


    Indices: 245--269  Score: 50
    Period size: 11  Copynumber: 2.3  Consensus size: 11

        235 AATCAAATAG

                       
        245 AAAAAGAAAAT
          1 AAAAAGAAAAT

                       
        256 AAAAAGAAAAT
          1 AAAAAGAAAAT

               
        267 AAA
          1 AAA

        270 CAATCTCCCC


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   14  1.00

ACGTcount: A:0.84, C:0.00, G:0.08, T:0.08


Consensus pattern (11 bp):   
AAAAAGAAAAT
Done.