Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020969.1 Corchorus olitorius cultivar O-4 contig21002, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6323
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30


Found at i:3829 original size:24 final size:24

Alignment explanation


    Indices: 3779--3831  Score: 61
    Period size: 24  Copynumber: 2.2  Consensus size: 24

       3769 ATTAATTTTT

                *                 * 
       3779 AAAATTAAAAAAAATTAAAAACTA
          1 AAAAGTAAAAAAAATTAAAAACAA

                     *            *  
       3803 AAAAGTAAATAAAATTCAAAAAAAA
          1 AAAAGTAAAAAAAATT-AAAAACAA

                
       3828 AAAA
          1 AAAA

       3832 ACCACCTACG


Statistics
Matches: 24,  Mismatches: 4, Indels: 1
        0.83            0.14        0.03

Matches are distributed among these distances:
  24   14  0.58
  25   10  0.42

ACGTcount: A:0.77, C:0.04, G:0.02, T:0.17


Consensus pattern (24 bp):   
AAAAGTAAAAAAAATTAAAAACAA
Done.