Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020970.1 Corchorus olitorius cultivar O-4 contig21003, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10490
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31


Found at i:716 original size:21 final size:21

Alignment explanation


    Indices: 690--821  Score: 189
    Period size: 21  Copynumber: 6.3  Consensus size: 21

        680 TGCTAGAAGT

                                  
        690 TCATTGGAGCAA-GTTCCAAGC
          1 TCATTGGAG-AAGGTTCCAAGC

                                  
        711 TCATTGGAGCAA-GTTCCAAGC
          1 TCATTGGAG-AAGGTTCCAAGC

                                *
        732 TCATTGGAGAAGGTTCCAAGT
          1 TCATTGGAGAAGGTTCCAAGC

                                *
        753 TCATTGGAGAAGGTTCCAAGT
          1 TCATTGGAGAAGGTTCCAAGC

                                *
        774 TCATTGGAGAAGGTTCCAAGA
          1 TCATTGGAGAAGGTTCCAAGC

                                  
        795 TCATTGGAGAAGGCTT-CAAGC
          1 TCATTGGAGAAGG-TTCCAAGC

                  
        816 TCATTG
          1 TCATTG

        822 AAATTGCCTA


Statistics
Matches: 106,  Mismatches: 3, Indels: 4
        0.94            0.03        0.04

Matches are distributed among these distances:
  20    2  0.02
  21  102  0.96
  22    2  0.02

ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27


Consensus pattern (21 bp):   
TCATTGGAGAAGGTTCCAAGC

Done.