Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020974.1 Corchorus olitorius cultivar O-4 contig21007, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53284

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4777--4807
15
2.1
15
100
0
62
25
12
19
41
1.87
9469--9717
101
2.5
100
79
4
277
39
15
15
29
1.89
9488--9716
50
4.5
50
85
1
253
38
15
16
30
1.89
10314--10394
22
3.5
21
71
26
65
58
16
14
11
1.64
13309--13350
22
1.9
22
95
0
75
45
14
11
28
1.80
13461--13506
21
2.1
22
88
4
67
10
19
52
17
1.74
18703--18789
31
2.8
31
84
5
95
24
21
24
29
1.99
19478--19545
32
2.1
32
84
10
86
32
17
19
30
1.95
24255--24280
2
13.0
2
100
0
52
50
0
0
50
1.00
24437--24481
2
23.0
2
90
4
74
51
2
0
46
1.13
28752--28779
12
2.3
12
100
0
56
10
0
50
39
1.37
35694--35735
15
2.7
15
88
3
57
14
9
11
64
1.50
36083--36145
22
2.8
22
83
9
74
47
7
14
30
1.72
36095--36146
21
2.5
21
78
12
61
53
5
11
28
1.60
41093--41152
29
2.0
31
87
6
88
35
8
18
38
1.81
42508--42548
15
2.6
16
84
7
57
14
7
12
65
1.45
48865--48935
21
3.4
21
96
3
126
25
25
21
28
1.99
52225--52271
26
1.9
23
87
12
67
40
4
27
27
1.75

Tables:   1

The End!