genome.fa.s20975.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020975.1 Corchorus olitorius cultivar O-4 contig21008, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117838

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
279--349	21	3.4	21	94	3	117	26	26	18	28	1.98
1977--2019	21	2.0	21	100	0	86	25	32	13	27	1.94
7099--7144	12	4.0	12	80	11	60	84	0	15	0	0.62
7101--7145	10	4.5	10	80	8	56	86	0	13	0	0.57
7102--7151	10	5.2	9	81	11	55	84	0	16	0	0.63
7100--7148	13	3.8	12	86	13	62	85	0	14	0	0.59
10860--10896	6	6.3	6	96	3	67	18	0	51	29	1.47
10855--10896	18	2.4	17	88	11	66	16	0	52	30	1.44
13864--13900	19	2.0	19	89	5	58	64	0	0	35	0.94
14192--14280	16	5.6	16	70	12	67	7	14	39	38	1.75
14192--14271	32	2.5	32	91	0	133	8	13	38	38	1.76
14274--14321	23	2.1	23	88	7	71	4	18	50	27	1.65
14454--14500	13	3.8	12	78	13	51	55	4	0	40	1.19
15312--15364	2	27.5	2	78	14	58	47	1	0	50	1.12
15303--15364	14	4.2	14	82	14	72	46	1	1	50	1.20
15594--15624	16	1.9	16	93	0	53	9	16	38	35	1.81
17570--17600	9	3.6	9	95	4	55	48	0	19	32	1.49
17570--17609	17	2.3	18	86	4	55	52	0	17	30	1.45
18858--18985	49	2.7	48	83	7	154	29	14	6	50	1.67
21796--21826	9	3.6	9	95	4	55	48	0	19	32	1.49
21796--21835	17	2.3	18	86	4	55	52	0	17	30	1.45
23100--23228	49	2.7	47	81	10	154	28	14	6	50	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23529--23579	20	2.5	20	78	12	52	54	11	0	33	1.37
28663--28702	21	2.0	22	85	14	59	37	15	20	27	1.92
36025--36069	23	1.9	24	90	4	74	33	24	22	20	1.97
37597--37653	21	2.7	21	97	0	105	38	7	26	28	1.82
41608--41697	38	2.3	39	83	7	112	26	25	16	31	1.97
41575--41856	77	3.7	77	74	11	265	25	20	17	36	1.94
41638--41853	38	5.6	38	79	11	201	25	20	17	37	1.94
41677--41853	39	4.6	39	81	8	157	24	19	17	38	1.93
44203--44260	17	3.3	18	80	11	66	56	15	12	15	1.67
44212--44274	16	3.9	16	76	13	67	53	17	7	20	1.68
44201--44295	33	2.8	34	77	7	104	55	17	9	16	1.67
44212--44294	18	4.9	17	72	19	75	54	19	7	19	1.67
45660--45702	2	22.0	2	90	4	70	48	0	2	48	1.14
59605--59644	19	2.2	17	86	8	53	7	10	17	65	1.46
59793--59858	34	1.9	35	84	9	91	36	15	7	40	1.75
64771--65166	22	18.1	22	71	13	135	36	18	9	35	1.83
64792--64888	20	4.7	20	67	16	63	36	19	11	32	1.88
64790--64930	43	3.3	42	83	7	171	34	17	12	34	1.88
64790--65166	45	8.6	44	72	12	226	36	17	9	35	1.83
64998--65166	67	2.5	64	73	11	160	38	18	7	35	1.79
65179--65263	22	3.8	23	78	9	95	41	10	11	36	1.76
71876--72193	40	7.7	40	79	7	307	37	17	30	14	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71918--72232	83	3.8	84	81	7	338	36	17	31	14	1.90
71878--72222	126	2.8	125	85	4	455	37	18	29	14	1.90
71918--72394	43	10.9	43	77	9	355	36	17	29	15	1.91
72207--72490	48	5.8	48	83	5	302	37	17	25	19	1.94
72169--72440	97	2.8	94	81	7	309	36	17	27	18	1.93
73207--73301	50	1.9	50	80	8	113	31	16	6	45	1.73
73342--73973	151	4.2	152	88	3	864	40	15	2	41	1.60
73342--73973	252	2.5	252	90	1	971	40	15	2	41	1.60
73342--73973	101	6.2	101	89	2	878	40	15	2	41	1.60
73959--74092	51	2.7	50	86	4	180	40	12	4	42	1.63
75226--75284	30	2.0	30	90	3	93	22	13	6	57	1.59
75260--75333	38	1.9	38	91	0	121	28	17	6	47	1.73
78897--78970	26	2.8	27	77	4	78	41	24	13	20	1.88
82724--82783	2	30.5	2	96	3	113	51	0	48	0	1.00
87050--87103	19	2.6	21	77	19	60	38	18	3	38	1.69
89580--89669	21	4.3	21	95	0	153	27	28	13	30	1.94
90493--90545	22	2.4	22	78	12	56	66	11	5	16	1.42
95214--95286	27	2.7	27	95	0	128	20	15	24	39	1.91
95395--95492	48	2.0	48	100	0	196	22	14	15	47	1.81
95565--95590	13	2.0	13	100	0	52	30	15	7	46	1.74
97985--98069	40	2.1	41	86	2	118	24	17	14	43	1.86
101796--101870	30	2.5	30	83	12	91	24	20	13	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102003--102076	31	2.4	31	86	6	98	40	12	17	29	1.86
102936--103199	144	1.8	144	84	3	361	35	10	1	52	1.46
103352--103413	31	2.1	30	91	8	101	33	14	12	38	1.84
103557--103633	32	2.5	31	86	2	100	46	14	15	23	1.82
103557--103639	31	2.6	32	86	1	105	43	13	15	27	1.84
105516--105760	123	2.0	121	96	1	454	34	15	18	31	1.92
105965--106892	433	2.1	435	82	5	1093	30	14	13	41	1.84
112491--112523	2	16.5	2	100	0	66	0	0	51	48	1.00
114374--115536	479	2.4	478	84	5	1557	37	12	14	36	1.84
116757--116804	21	2.2	21	78	10	53	37	4	10	47	1.57
117223--117264	21	2.0	21	81	9	50	47	7	4	40	1.52
116938--117837	469	1.9	469	86	3	1276	37	12	13	36	1.83
117690--117731	21	2.0	21	86	9	59	40	7	14	38	1.73

Tables:   1

The End!