Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020979.1 Corchorus olitorius cultivar O-4 contig21012, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71112

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8875--8929
22
2.5
22
79
8
58
34
16
12
36
1.87
9864--9900
4
9.2
4
100
0
74
51
0
24
24
1.49
12949--12981
16
2.1
16
94
0
57
39
12
9
39
1.74
12996--13029
17
1.9
18
88
5
52
5
14
5
73
1.21
14047--14095
21
2.4
21
82
3
64
42
12
22
22
1.86
14955--14994
21
1.9
21
84
0
53
17
2
55
25
1.55
15900--15962
21
3.0
21
100
0
126
19
19
28
33
1.96
17512--17613
28
3.7
28
78
5
100
37
26
19
16
1.93
27679--27725
26
1.9
23
87
12
67
40
4
27
27
1.75
39052--39081
2
15.0
2
100
0
60
50
0
0
50
1.00
39079--39107
4
7.2
4
100
0
58
24
0
24
51
1.48
39856--40002
51
2.9
51
78
6
131
44
3
14
38
1.62
40693--40889
41
4.7
41
88
6
245
10
25
24
39
1.88
40693--41587
40
21.3
41
73
16
251
12
27
20
40
1.88
40693--41012
82
3.6
87
81
10
314
11
26
23
39
1.88
40854--41165
48
6.8
49
74
12
218
12
27
20
39
1.89
41006--41624
40
15.3
40
78
6
534
13
28
17
40
1.87
42569--42753
40
4.6
40
78
4
194
12
29
19
38
1.88
43291--43370
23
3.3
23
66
16
63
23
31
26
18
1.98
47440--47470
16
1.9
16
93
0
53
6
9
9
74
1.23
47870--48085
50
4.3
50
81
4
202
26
24
11
37
1.90
48074--48266
27
7.1
27
92
0
287
25
21
17
35
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48268--48377
41
2.7
40
78
8
123
33
20
7
39
1.80
53215--53241
2
13.5
2
100
0
54
51
0
0
48
1.00
59337--59369
16
2.1
16
94
0
57
39
12
9
39
1.74
59384--59424
20
2.0
20
86
9
57
4
12
4
78
1.07
67690--67717
1
28.0
1
100
0
56
0
0
0
100
0.00

Tables:   1

The End!