genome.fa.s20980.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020980.1 Corchorus olitorius cultivar O-4 contig21013, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71083

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6771--6989	115	1.9	115	94	0	384	50	5	12	31	1.63
7107--7397	106	2.8	106	92	3	464	39	9	7	42	1.67
7107--7432	106	3.1	106	88	4	421	40	10	7	42	1.66
7472--7501	15	2.0	15	93	0	51	83	0	13	3	0.77
9121--9194	34	2.1	35	95	2	132	51	8	13	27	1.69
9280--9383	21	4.9	21	77	2	82	37	14	9	38	1.79
11033--11080	20	2.5	20	86	6	64	43	0	2	54	1.12
15094--15138	19	2.4	19	92	0	81	22	11	24	42	1.86
16164--16235	16	4.6	16	82	3	92	5	15	38	40	1.70
16225--16282	23	2.5	23	85	0	71	5	20	46	27	1.72
16409--16455	13	3.8	12	78	13	51	55	4	0	40	1.19
16709--16780	31	2.3	30	76	19	76	59	9	4	26	1.47
17060--17101	21	2.0	22	81	13	52	40	4	7	47	1.52
17229--17268	17	2.4	17	87	8	55	5	22	52	20	1.65
17230--17268	11	3.5	11	89	6	60	5	20	53	20	1.64
18040--18064	9	2.8	9	100	0	50	80	0	0	20	0.72
26465--26542	41	1.9	41	94	0	138	28	11	3	56	1.52
29453--30281	54	15.6	54	87	2	1063	27	17	6	48	1.73
30500--30577	29	2.7	29	83	0	93	20	14	23	42	1.88
36036--36215	41	4.4	41	86	4	222	35	13	15	36	1.87
40228--40271	21	2.1	21	91	0	70	22	0	6	70	1.11
40228--40284	21	2.8	20	79	12	62	21	1	7	70	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43578--43634	26	2.2	26	96	0	105	17	22	26	33	1.96
51249--51277	2	14.5	2	100	0	58	48	51	0	0	1.00
57844--58048	22	9.2	22	69	20	90	40	10	13	35	1.79
58129--58696	22	25.7	22	72	8	275	37	8	14	38	1.77
58310--58674	23	16.2	22	75	8	243	38	7	15	38	1.75
58129--58674	45	12.4	44	74	10	274	38	8	14	38	1.77
58339--58624	157	1.8	158	89	2	450	38	6	15	38	1.74
58339--58856	45	11.4	45	73	13	237	37	9	15	38	1.79
58754--58863	22	5.1	21	80	12	116	38	10	17	33	1.85
58728--58834	22	5.1	20	73	16	99	35	13	16	34	1.88
58723--58835	42	2.6	44	83	4	149	35	13	15	35	1.87
58900--58961	22	2.9	21	83	9	72	41	6	9	41	1.63
58904--58979	22	3.5	21	71	10	55	42	7	13	36	1.73
60497--60588	41	2.3	41	88	5	134	36	2	16	44	1.60
66941--66997	30	1.9	30	89	7	89	42	5	17	35	1.72

Tables:   1

The End!