Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020981.1 Corchorus olitorius cultivar O-4 contig21014, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4454
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.34


Found at i:218 original size:29 final size:30

Alignment explanation


    Indices: 170--248  Score: 99
    Period size: 29  Copynumber: 2.7  Consensus size: 30

        160 TTCATTTTTG

                *          *        *     
        170 AAACGTAAGGGATTAATTTGTCCCGAAA-A
          1 AAACATAAGGGATTATTTTGTCCCAAAACA

               *                           
        199 AAATATAAGGGATTATTTTGTCCCAAAAGCA
          1 AAACATAAGGGATTATTTTGTCCCAAAA-CA

                                
        230 AAACATAAGGGATT-TTTTG
          1 AAACATAAGGGATTATTTTG

        249 GGTATTTAGC


Statistics
Matches: 43,  Mismatches: 5, Indels: 3
        0.84            0.10        0.06

Matches are distributed among these distances:
  29   24  0.56
  30    5  0.12
  31   14  0.33

ACGTcount: A:0.41, C:0.11, G:0.19, T:0.29


Consensus pattern (30 bp):   
AAACATAAGGGATTATTTTGTCCCAAAACA
Done.