Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020983.1 Corchorus olitorius cultivar O-4 contig21016, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56694

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1761--1930
85
2.0
84
90
1
268
51
2
11
34
1.51
5766--5800
11
3.2
11
87
0
52
2
2
17
77
1.02
6665--6916
126
2.0
126
99
0
495
19
10
21
48
1.79
12201--12323
30
4.1
30
89
2
174
50
24
6
18
1.70
12234--12283
17
3.2
17
67
21
54
48
24
8
20
1.76
15033--15307
50
5.5
50
84
3
322
24
25
11
38
1.89
15032--15307
99
2.8
100
82
5
324
24
25
11
38
1.89
15031--15307
149
1.9
150
85
2
387
24
25
11
38
1.89
16337--16374
15
2.5
15
87
8
51
2
10
0
86
0.66
23525--23556
15
2.1
15
94
0
55
40
6
15
37
1.73
23858--23900
20
2.2
20
100
0
86
60
9
16
13
1.58
25886--26776
141
6.2
141
84
5
1067
29
21
16
32
1.95
25886--26740
426
2.0
427
86
2
1182
29
21
16
32
1.95
25886--26776
285
3.1
283
83
5
1096
29
21
16
32
1.95
26820--26933
37
3.0
37
70
6
104
22
21
11
44
1.84
26939--27037
40
2.5
39
87
6
137
29
23
10
37
1.87
28987--29049
3
21.0
3
100
0
126
33
0
0
66
0.92
31343--31382
17
2.2
20
78
17
50
15
2
7
75
1.14
31345--31382
19
2.1
19
85
9
53
13
2
7
76
1.11
33321--33465
30
4.8
30
88
4
193
49
25
6
17
1.71
33354--33433
17
5.2
17
64
22
59
50
23
7
18
1.73
33321--33465
61
2.4
62
86
6
199
49
25
6
17
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46358--46383
6
4.3
6
100
0
52
84
0
15
0
0.62
48323--48380
26
2.2
26
96
0
107
44
3
6
44
1.47
48838--48883
21
2.2
21
84
7
58
67
10
6
15
1.40
55568--55605
16
2.4
17
87
12
55
7
15
39
36
1.77

Tables:   1

The End!