Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020985.1 Corchorus olitorius cultivar O-4 contig21018, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10115

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2501--2626
44
2.9
44
82
5
132
26
20
10
42
1.84
3750--3800
15
3.5
15
89
2
68
41
7
13
37
1.74
3750--3809
15
4.3
13
80
17
59
40
6
15
38
1.73
4082--4106
12
2.1
12
100
0
50
48
16
8
28
1.74
5294--5340
23
2.1
23
88
4
69
27
19
29
23
1.98
5937--6121
67
2.8
65
85
4
237
37
12
22
26
1.91
5932--6282
67
5.3
66
81
7
233
35
13
23
26
1.93
6094--6322
64
3.5
64
83
4
282
31
13
24
29
1.94
6506--6719
35
6.1
35
84
8
249
33
18
21
26
1.97
6506--6719
105
2.0
104
84
8
274
33
18
21
26
1.97
6607--6776
69
2.4
70
89
4
245
30
19
24
26
1.98
9391--9544
28
5.5
28
92
0
245
16
17
22
42
1.88

Tables:   1

The End!