genome.fa.s20987.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020987.1 Corchorus olitorius cultivar O-4 contig21020, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  193010

Tables:   1   

This is table  1  of  1  ( 87 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1311--1336	11	2.4	11	100	0	52	84	0	15	0	0.62
5010--5063	19	2.6	21	77	19	60	38	18	3	38	1.69
7037--7062	12	2.2	12	100	0	52	30	0	15	53	1.42
9567--9594	14	2.0	14	100	0	56	14	0	21	64	1.29
10110--10185	33	2.3	32	84	6	91	31	19	23	25	1.98
10131--10228	32	3.0	32	90	1	142	26	21	24	27	1.99
16155--16279	65	1.9	65	95	0	223	20	27	29	22	1.99
19587--19716	65	2.0	65	90	0	206	20	26	31	21	1.98
20870--20911	19	2.2	19	83	8	50	30	2	0	66	1.04
20899--20941	19	2.2	20	80	12	54	27	11	0	60	1.31
20868--20969	46	2.2	46	89	0	150	28	7	0	62	1.29
20996--21073	8	9.6	8	72	8	50	24	11	0	64	1.27
22090--22136	21	2.2	21	92	0	76	8	53	19	19	1.70
22244--22298	21	2.6	21	85	0	65	16	47	21	14	1.82
24164--24223	29	2.0	31	87	6	88	35	8	18	38	1.81
25594--25633	15	2.6	16	84	8	55	12	7	12	67	1.41
31312--31352	3	13.7	3	100	0	82	68	0	0	31	0.90
36349--36419	27	2.6	27	93	0	115	36	23	21	18	1.95
36804--36985	50	3.6	50	90	2	285	26	24	11	36	1.90
36997--37181	50	3.7	50	94	1	327	28	12	28	30	1.94
37814--37964	50	3.0	50	84	0	194	36	11	17	35	1.85
38547--38622	28	2.8	29	71	16	81	9	1	13	76	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38558--38606	19	2.6	19	84	9	73	4	2	10	83	0.85
38558--38635	20	3.8	19	78	15	77	7	1	14	76	1.05
38585--38629	16	2.8	16	75	3	54	11	0	13	75	1.05
42496--42534	18	2.2	18	90	9	62	30	20	2	46	1.64
42494--42545	10	5.2	10	81	13	54	34	19	1	44	1.62
42494--42545	18	2.6	21	77	22	58	34	19	1	44	1.62
49220--49813	40	14.7	38	77	11	417	36	21	26	15	1.94
49219--49813	81	7.4	80	77	12	447	36	21	26	15	1.94
49220--49820	121	4.9	120	76	12	541	36	21	26	15	1.94
50958--51001	19	2.4	18	81	7	52	45	9	6	38	1.63
61142--61241	52	1.9	52	89	0	155	45	13	17	25	1.84
63795--63827	2	16.5	2	100	0	66	48	0	0	51	1.00
68713--68872	78	2.0	79	92	3	270	27	18	26	27	1.98
69110--69142	13	2.5	13	90	0	57	36	18	3	42	1.66
76362--76407	23	2.0	23	95	0	83	15	4	34	45	1.66
76897--76996	48	2.1	48	80	16	109	50	8	7	35	1.59
83959--84427	50	9.4	50	75	7	339	41	5	17	35	1.73
83962--84427	101	4.7	100	78	5	327	41	6	16	35	1.73
83959--84342	151	2.5	150	83	3	425	40	5	17	36	1.73
84919--85213	43	6.7	43	83	6	385	22	26	16	33	1.96
85228--85428	40	5.0	40	88	4	289	16	23	21	38	1.93
85228--85428	81	2.5	80	85	6	280	16	23	21	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85399--85759	49	7.6	48	79	9	384	11	21	21	45	1.83
85399--85674	145	1.9	146	88	2	421	11	21	21	46	1.82
85627--85712	40	2.2	40	91	0	136	6	20	24	47	1.75
85586--85759	89	2.0	89	84	6	228	10	22	20	45	1.81
86864--87074	41	5.2	41	74	6	126	24	13	12	49	1.76
86993--87056	19	3.2	19	68	12	56	26	12	14	46	1.79
92641--92689	16	3.1	17	85	11	68	53	6	8	32	1.55
94210--94772	35	15.6	36	78	6	523	17	20	19	42	1.89
94511--94772	80	3.5	79	73	15	218	17	19	20	41	1.90
94210--94772	71	7.8	71	76	8	485	17	20	19	42	1.89
95031--95720	30	22.9	30	92	1	1058	18	14	18	48	1.81
96393--96476	44	2.0	45	83	9	113	54	5	3	35	1.42
100855--100945	41	2.2	41	78	0	110	25	12	10	51	1.71
107130--107154	13	1.9	13	100	0	50	24	20	16	40	1.91
110911--110959	17	3.0	16	80	11	55	36	10	38	14	1.80
118826--118852	12	2.2	12	100	0	54	44	0	25	29	1.54
119575--120018	35	12.7	35	87	0	555	40	22	20	15	1.91
121398--121436	15	2.6	15	83	0	51	5	20	0	74	1.01
122452--122615	82	2.0	82	100	0	328	19	25	9	45	1.81
123168--123210	22	2.0	22	81	9	52	16	9	11	62	1.53
123570--123604	14	2.8	12	87	12	52	45	2	8	42	1.49
128851--128927	40	1.9	41	83	2	102	44	18	16	20	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133842--133884	21	2.0	22	86	4	61	62	4	6	25	1.40
150286--150315	14	2.1	15	93	6	53	13	16	6	63	1.50
150293--150326	17	1.9	18	88	5	52	17	11	5	64	1.45
150997--151027	16	1.9	16	93	0	53	83	0	0	16	0.64
152573--152648	26	2.9	27	79	15	86	18	10	28	42	1.83
152573--152675	27	3.8	27	76	15	88	18	13	28	39	1.88
160897--160938	21	2.0	22	90	4	68	23	28	11	35	1.91
163437--163470	9	3.6	9	85	14	50	76	11	0	11	1.02
163441--163491	5	9.6	5	80	16	50	68	15	0	15	1.21
163437--163492	18	2.6	23	68	31	59	71	14	0	14	1.15
163449--163492	5	7.7	6	85	14	58	68	15	0	15	1.22
164100--164349	50	5.0	50	92	0	401	32	15	14	37	1.87
164104--164349	100	2.5	100	96	0	447	32	15	14	37	1.88
164802--164955	79	1.9	80	89	1	238	29	19	14	35	1.92
165039--165426	50	7.8	50	90	4	570	29	28	13	28	1.94
165902--166005	27	3.8	27	76	12	88	17	14	25	42	1.87
176211--176246	19	1.9	18	88	5	54	41	8	22	27	1.82
176199--176258	30	2.0	30	83	6	77	41	8	18	31	1.80
182633--183046	169	2.5	168	93	1	702	42	26	10	20	1.84
182641--183047	43	9.6	43	84	7	512	42	26	10	20	1.84
182633--183047	84	4.9	84	92	1	688	42	26	10	20	1.84

Tables:   1

The End!