Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020994.1 Corchorus olitorius cultivar O-4 contig21027, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11920
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.32


Found at i:8169 original size:42 final size:43

Alignment explanation


    Indices: 8118--8211  Score: 129
    Period size: 45  Copynumber: 2.2  Consensus size: 43

       8108 AGTGCATTAC

                                    *                * 
       8118 CTAA-ATTCTA-CTCCATCTCTAGGTAATTCATCAAAATAATG
          1 CTAATATTCTACCTCCATCTCTAGATAATTCATCAAAATAAAG

                                            *            
       8159 CTAATATTCTACTCCTCCATCTCTAGATAATTTATCAAAATAAAG
          1 CTAATATTCTA--CCTCCATCTCTAGATAATTCATCAAAATAAAG

                    
       8204 CTAATATT
          1 CTAATATT

       8212 AATTGTTGCT


Statistics
Matches: 46,  Mismatches: 3, Indels: 4
        0.87            0.06        0.08

Matches are distributed among these distances:
  41    4  0.09
  42    6  0.13
  45   36  0.78

ACGTcount: A:0.37, C:0.21, G:0.05, T:0.36


Consensus pattern (43 bp):   
CTAATATTCTACCTCCATCTCTAGATAATTCATCAAAATAAAG
Done.