Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01020995.1 Corchorus olitorius cultivar O-4 contig21028, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2919
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32


Found at i:1128 original size:21 final size:21

Alignment explanation


    Indices: 1104--1153  Score: 73
    Period size: 21  Copynumber: 2.4  Consensus size: 21

       1094 CGCCCATTCA

                           **    
       1104 CCGTGCCACCACCGGTTAAGC
          1 CCGTGCCACCACCGGCCAAGC

                              *  
       1125 CCGTGCCACCACCGGCCATGC
          1 CCGTGCCACCACCGGCCAAGC

                    
       1146 CCGTGCCA
          1 CCGTGCCA

       1154 TCGCCATTCC


Statistics
Matches: 26,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   26  1.00

ACGTcount: A:0.16, C:0.48, G:0.24, T:0.12


Consensus pattern (21 bp):   
CCGTGCCACCACCGGCCAAGC
Done.