Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000210.1 Corchorus olitorius cultivar O-4 contig00210, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 674

Length: 1124
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28


Found at i:696 original size:28 final size:29

Alignment explanation


    Indices: 660--737  Score: 88
    Period size: 28  Copynumber: 2.8  Consensus size: 29

        650 TTCAAAGTAC

                *      *            *    
        660 AAGGTTAAAACTGTAAATTTA-ACCTTCT
          1 AAGGGTAAAACGGTAAATTTATACATTCT

                                  *      
        688 AAGGGTAAAACGGT-AATTTATTCATTCT
          1 AAGGGTAAAACGGTAAATTTATACATTCT

            *               *     
        716 TAGGGTAAAACGGTAATTTTAT
          1 AAGGGTAAAACGGTAAATTTAT

        738 GCTCATACAG


Statistics
Matches: 42,  Mismatches: 6, Indels: 3
        0.82            0.12        0.06

Matches are distributed among these distances:
  27    6  0.14
  28   30  0.71
  29    6  0.14

ACGTcount: A:0.37, C:0.10, G:0.17, T:0.36


Consensus pattern (29 bp):   
AAGGGTAAAACGGTAAATTTATACATTCT
Done.