Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021004.1 Corchorus olitorius cultivar O-4 contig21037, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4758
ACGTcount: A:0.33, C:0.14, G:0.21, T:0.32


Found at i:3743 original size:25 final size:25

Alignment explanation


    Indices: 3705--3757  Score: 61
    Period size: 25  Copynumber: 2.1  Consensus size: 25

       3695 CGCGGCCCAA

                          *          
       3705 CGCCTAGGCCAGGCGCACGGGCCAG
          1 CGCCTAGGCCAGGCACACGGGCCAG

                 *   *      **       
       3730 CGCCTTGGCTAGGCACGTGGGCCAG
          1 CGCCTAGGCCAGGCACACGGGCCAG

               
       3755 CGC
          1 CGC

       3758 GGCCCAGCGC


Statistics
Matches: 23,  Mismatches: 5, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  25   23  1.00

ACGTcount: A:0.13, C:0.38, G:0.40, T:0.09


Consensus pattern (25 bp):   
CGCCTAGGCCAGGCACACGGGCCAG
Done.