Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021005.1 Corchorus olitorius cultivar O-4 contig21038, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1816
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.36


Found at i:419 original size:12 final size:13

Alignment explanation


    Indices: 387--433  Score: 53
    Period size: 13  Copynumber: 3.6  Consensus size: 13

        377 CTATTTTATT

                         
        387 ATTGTTTTATTAA
          1 ATTGTTTTATTAA

                         
        400 ATTGTTTTA-TAA
          1 ATTGTTTTATTAA

                       *   
        412 A-TGTTTTTAAATAA
          1 ATTG-TTTT-ATTAA

                    
        426 ATTGTTTT
          1 ATTGTTTT

        434 GGGTGCATTA


Statistics
Matches: 30,  Mismatches: 0, Indels: 7
        0.81            0.00        0.19

Matches are distributed among these distances:
  11    2  0.07
  12    8  0.27
  13   10  0.33
  14    8  0.27
  15    2  0.07

ACGTcount: A:0.32, C:0.00, G:0.09, T:0.60


Consensus pattern (13 bp):   
ATTGTTTTATTAA
Done.