Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021009.1 Corchorus olitorius cultivar O-4 contig21042, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4906
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32


Found at i:1272 original size:17 final size:17

Alignment explanation


    Indices: 1250--1282  Score: 57
    Period size: 17  Copynumber: 1.9  Consensus size: 17

       1240 CTCCTCTATC

                     *       
       1250 ATGAAAACACTTTTTTT
          1 ATGAAAACAATTTTTTT

                            
       1267 ATGAAAACAATTTTTT
          1 ATGAAAACAATTTTTT

       1283 AATTACCCTT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.39, C:0.09, G:0.06, T:0.45


Consensus pattern (17 bp):   
ATGAAAACAATTTTTTT

Done.