Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021012.1 Corchorus olitorius cultivar O-4 contig21045, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46838

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
414--1047
35
17.9
35
89
3
853
28
13
19
39
1.89
3680--3795
58
2.0
58
91
0
187
39
15
12
32
1.84
12213--12254
15
2.8
15
79
20
52
42
42
14
0
1.45
12590--12692
32
3.2
32
88
0
152
38
35
9
15
1.80
12794--12851
31
2.0
29
86
10
82
25
15
1
56
1.49
17583--17789
36
5.7
36
77
15
187
28
15
17
38
1.91
19101--19144
20
2.2
20
84
8
54
6
18
13
61
1.54
21884--21929
21
2.2
21
84
7
58
43
17
36
2
1.61
32619--32645
6
4.5
6
100
0
54
29
0
0
70
0.88
33501--33530
14
2.1
14
93
0
51
23
0
13
63
1.29
33554--33610
30
1.9
29
89
10
89
21
15
5
57
1.57
37972--38498
39
13.5
39
91
0
813
31
16
17
34
1.92
38443--38707
141
1.9
139
82
4
336
22
23
16
37
1.94
42315--42462
52
2.9
52
80
8
178
31
19
12
36
1.90
42442--42647
36
5.6
36
80
12
206
29
16
16
37
1.91
43297--43384
44
2.0
44
97
0
167
36
11
5
46
1.64
43311--43383
22
3.3
21
64
9
56
39
12
5
42
1.66
44341--44392
25
2.1
25
85
7
70
42
11
0
46
1.40
44618--44814
102
1.9
102
94
0
349
34
11
1
52
1.45

Tables:   1

The End!