genome.fa.s21014.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021014.1 Corchorus olitorius cultivar O-4 contig21047, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79800

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4673--4737	28	2.3	29	78	7	71	47	4	0	47	1.22
5402--5593	60	3.5	55	82	10	221	14	25	16	44	1.85
5402--5618	111	1.9	115	81	5	264	13	26	14	45	1.83
5660--5703	15	3.0	15	78	15	56	43	11	4	40	1.61
8453--8487	18	2.0	17	88	5	52	5	22	8	62	1.45
10055--10097	22	1.9	23	90	4	70	30	20	13	34	1.92
15312--15359	25	1.9	25	91	0	78	41	33	6	18	1.76
19547--19592	22	2.1	22	84	4	58	21	8	8	60	1.53
19726--19805	30	2.7	30	96	3	146	36	3	23	36	1.73
33223--33578	66	5.4	65	78	6	297	43	14	20	21	1.87
43868--43908	20	2.0	22	85	9	59	26	24	14	34	1.94
45173--45213	21	2.0	21	90	0	64	21	46	12	19	1.82
45806--45953	60	2.5	60	86	2	199	31	8	16	43	1.78
51603--51632	8	3.6	8	95	4	51	53	13	0	33	1.40
62329--62365	17	2.1	18	90	5	58	27	27	27	18	1.98
66807--66891	43	2.0	43	95	0	152	49	7	17	25	1.72
66856--66954	52	1.9	52	93	0	171	49	7	15	28	1.70
67000--67153	78	2.0	78	96	0	281	32	23	14	29	1.94
70602--70685	45	1.9	43	97	0	141	39	23	4	32	1.76
71655--71906	131	1.9	130	87	4	373	36	11	1	50	1.50
73990--74263	67	4.0	67	90	4	404	49	10	16	24	1.76
75858--75888	10	3.1	10	100	0	62	51	9	0	38	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77943--77995	26	2.0	26	100	0	106	18	15	37	28	1.91
78954--79080	45	2.8	45	93	0	227	39	21	6	33	1.78

Tables:   1

The End!