Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021015.1 Corchorus olitorius cultivar O-4 contig21048, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25458

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
864--888
12
2.1
12
100
0
50
24
0
8
68
1.16
2094--2165
37
1.9
37
97
0
135
33
23
11
31
1.90
5327--5752
47
9.7
47
70
16
306
19
27
17
35
1.94
5323--5793
87
5.4
86
87
4
664
19
27
17
35
1.94
5317--5879
86
6.6
86
84
6
664
19
26
18
36
1.95
5720--5914
40
4.8
39
80
8
196
18
24
21
35
1.96
5761--5914
81
1.9
81
85
7
215
18
22
22
37
1.94
5317--5935
47
14.6
39
68
17
276
19
26
18
36
1.94
8319--8349
14
2.1
15
94
5
55
19
6
9
64
1.45
13442--13478
2
18.5
2
100
0
74
48
0
0
51
1.00
13903--13933
13
2.3
14
94
5
55
45
6
12
35
1.68
15454--15793
35
9.5
36
78
7
257
18
19
18
43
1.88
15594--15779
73
2.5
73
80
10
227
17
17
17
47
1.83
16048--16725
30
22.9
30
89
3
989
20
14
19
45
1.85

Tables:   1

The End!