Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021019.1 Corchorus olitorius cultivar O-4 contig21052, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43374

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1715--1750
19
1.9
18
88
5
54
27
22
8
41
1.82
2883--2977
42
2.3
42
90
1
147
44
8
21
26
1.80
5812--5889
41
1.9
41
94
0
138
43
16
14
25
1.85
16984--17025
19
2.3
18
92
8
68
9
16
0
73
1.08
18099--18137
10
3.6
10
89
10
51
0
15
2
82
0.79
22579--23112
131
4.1
131
85
3
619
33
15
11
39
1.83
24279--24541
136
1.9
136
81
6
318
36
24
3
35
1.72
25341--25406
33
2.0
33
93
0
114
12
39
36
12
1.80
25343--25419
33
2.3
33
88
0
109
12
37
36
12
1.83
28008--28251
73
3.3
74
85
4
307
44
14
11
30
1.80
28008--28351
73
4.7
75
79
8
296
43
12
11
32
1.79
28264--28404
75
1.9
75
92
0
237
39
11
12
36
1.80
33217--33284
21
3.2
21
93
4
111
27
19
25
27
1.98
33972--34018
26
1.9
23
87
12
67
27
25
6
40
1.80
34117--34159
8
5.2
8
86
13
61
83
0
2
13
0.74
34122--34158
15
2.4
15
95
4
65
86
0
0
13
0.57
38619--38651
10
3.4
10
83
8
50
9
0
15
75
1.03
38618--38651
9
3.7
9
84
7
50
11
0
14
73
1.10
38919--38992
27
2.8
27
85
2
96
43
25
13
17
1.86
42526--42567
15
2.7
15
92
3
66
64
14
9
11
1.50

Tables:   1

The End!