Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021022.1 Corchorus olitorius cultivar O-4 contig21055, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33386

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3--189
40
4.7
40
91
2
279
16
28
18
36
1.92
1535--1603
30
2.5
26
80
17
84
37
14
10
37
1.80
1545--1628
30
2.8
31
87
7
111
42
14
9
33
1.78
10568--10677
51
2.2
51
80
11
120
20
22
12
44
1.85
11047--11076
2
15.0
2
100
0
60
0
50
0
50
1.00
23056--23097
15
2.7
15
92
3
66
11
9
14
64
1.50
23478--23508
16
1.9
16
93
0
53
9
0
9
80
0.90
23521--23594
28
2.6
28
74
18
80
37
6
21
33
1.80
26823--26889
21
3.1
21
73
2
62
20
47
17
13
1.81
27242--27271
15
2.1
14
93
6
51
13
16
6
63
1.50
30136--30177
15
2.7
15
92
3
66
11
9
14
64
1.50

Tables:   1

The End!