genome.fa.s21023.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021023.1 Corchorus olitorius cultivar O-4 contig21056, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  170671

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16--47	2	16.0	2	100	0	64	50	0	0	50	1.00
1215--1252	20	1.9	20	84	10	51	44	21	2	31	1.66
2068--2199	39	3.4	39	86	5	185	12	24	21	42	1.86
2068--2238	79	2.2	78	83	7	204	12	23	21	41	1.88
2068--2219	39	3.8	39	85	7	182	13	25	19	42	1.87
2068--2238	39	4.4	38	82	10	143	12	23	21	41	1.88
5593--5630	2	19.0	2	94	0	67	47	0	2	50	1.15
5903--5940	12	2.8	14	80	19	53	57	7	0	34	1.28
8440--8506	35	1.9	35	84	0	89	35	17	14	31	1.91
9118--9170	2	26.5	2	92	0	88	49	47	3	0	1.19
15694--15762	35	2.0	35	91	0	111	34	18	14	31	1.91
18678--18723	22	2.1	22	92	8	76	47	26	4	21	1.69
18720--18856	69	2.0	69	82	5	170	46	17	8	27	1.76
21937--22009	35	2.1	36	92	2	121	34	20	13	31	1.92
22630--22665	2	18.0	2	100	0	72	50	0	0	50	1.00
23509--23577	35	2.0	35	91	0	111	37	20	11	30	1.88
23046--24978	971	2.0	971	86	2	2709	32	14	14	38	1.87
28516--28545	14	2.1	15	93	6	53	46	0	53	0	1.00
29392--29539	52	2.8	52	90	0	224	30	15	18	35	1.92
33327--33479	53	2.9	53	86	0	198	39	16	13	30	1.87
35411--35462	21	2.5	21	93	0	86	11	38	9	40	1.74
36167--36232	32	2.1	32	100	0	132	30	19	15	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39902--40011	38	2.9	38	83	1	123	10	22	11	54	1.68
39906--40024	38	3.1	36	80	7	121	10	21	10	57	1.62
48394--48545	76	2.0	76	82	10	186	17	28	28	25	1.97
49469--49527	26	2.3	25	82	2	73	16	16	18	47	1.83
51892--51936	21	2.1	21	84	8	56	42	4	26	26	1.74
55634--55686	27	1.9	28	88	11	83	77	5	9	7	1.12
67010--67039	13	2.3	13	94	0	51	56	16	3	23	1.55
68242--68299	29	2.0	29	100	0	116	34	24	20	20	1.97
68807--68855	7	7.4	7	79	9	50	4	28	0	67	1.09
68843--68886	23	1.9	23	90	9	72	0	36	0	63	0.95
84070--84141	35	2.1	35	83	0	90	37	22	9	30	1.86
85797--85940	40	3.6	40	78	12	161	36	22	16	25	1.94
85926--86233	52	6.0	52	88	2	442	37	18	15	28	1.92
86142--86217	22	3.2	22	64	25	55	36	19	18	25	1.94
87233--87267	6	6.0	6	86	6	54	0	20	0	80	0.72
87233--87267	17	2.0	17	88	5	52	0	20	0	80	0.72
92555--92622	26	2.5	28	88	4	95	13	22	27	36	1.91
95973--96489	47	10.9	47	92	2	836	47	4	19	28	1.69
96453--96525	36	2.0	36	84	5	94	46	6	17	28	1.74
96406--96578	83	2.0	82	83	9	215	46	6	19	27	1.75
101924--102414	40	12.0	40	81	8	501	38	18	25	17	1.93
102049--102413	81	4.5	80	84	5	457	38	18	24	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102430--102683	43	6.0	43	91	2	379	37	18	24	19	1.94
104397--104486	45	2.1	44	89	6	139	37	18	6	36	1.78
109875--109910	2	18.0	2	100	0	72	50	0	0	50	1.00
110849--110900	27	1.9	27	92	0	86	34	0	3	61	1.14
114108--114203	29	3.2	30	82	4	122	37	17	7	37	1.78
114108--114210	31	3.4	31	80	6	113	35	19	6	37	1.78
114466--114496	13	2.4	13	94	0	53	0	41	0	58	0.98
123752--124119	43	8.7	41	82	7	398	23	10	26	39	1.87
123752--124120	86	4.3	84	93	3	598	23	10	26	39	1.87
126696--126727	16	2.0	16	93	0	55	15	25	28	31	1.96
127718--127804	35	2.5	34	83	5	111	27	16	29	26	1.96
134225--134325	41	2.5	41	80	3	105	48	12	13	24	1.78
137944--138365	69	6.1	69	89	1	596	29	16	28	25	1.97
139401--139443	20	2.2	20	91	0	68	30	4	23	41	1.74
139881--139916	2	18.0	2	100	0	72	0	50	0	50	1.00
140516--140634	10	10.9	11	73	10	84	77	0	19	2	0.94
140516--140634	5	21.8	5	73	14	51	77	0	19	2	0.94
140558--140609	16	3.2	15	81	13	59	78	0	21	0	0.74
140529--140618	33	2.7	32	85	13	112	78	1	17	2	0.91
140517--140634	6	20.3	6	75	10	68	77	0	18	2	0.92
140540--140624	29	3.0	27	79	17	84	78	0	18	2	0.85
143332--143649	158	2.0	158	99	0	627	34	13	24	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
148970--149035	25	2.6	25	85	0	87	19	19	31	28	1.97
157453--157492	15	2.7	15	96	0	71	17	22	10	50	1.76
164446--164478	2	16.5	2	100	0	66	48	0	0	51	1.00
166270--166320	14	3.6	14	73	19	52	45	41	0	13	1.44
170241--170312	31	2.3	31	75	17	78	62	8	2	26	1.37

Tables:   1

The End!