Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021025.1 Corchorus olitorius cultivar O-4 contig21058, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22539

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--38
2
19.0
2
100
0
76
0
50
0
50
1.00
632--737
52
2.0
52
92
0
176
35
11
25
27
1.90
1193--1265
36
2.0
36
97
0
137
41
19
20
19
1.91
3130--3172
13
3.3
13
80
6
52
81
16
0
2
0.79
4951--4989
2
19.5
2
100
0
78
51
0
0
48
1.00
6668--6765
25
3.9
26
86
6
139
31
15
42
10
1.80
8931--8956
12
2.2
12
100
0
52
34
15
0
50
1.45
10761--10867
26
4.1
26
95
2
187
14
16
27
41
1.88
10763--10867
53
2.0
53
96
0
192
14
16
27
41
1.86
11183--11214
9
3.6
9
95
0
55
75
9
3
12
1.16
18344--18390
10
4.5
10
82
10
58
70
0
10
19
1.16
18748--18778
4
7.8
4
100
0
62
77
0
0
22
0.77
18745--18806
13
4.7
13
80
13
56
70
8
1
19
1.20
18776--18807
14
2.3
14
94
0
55
71
12
3
12
1.25
18820--18852
6
5.7
6
89
7
50
75
12
0
12
1.04
19138--19175
15
2.6
15
83
4
51
76
0
21
2
0.91
20778--21560
30
25.9
30
89
2
1165
20
13
20
46
1.84
21108--21180
38
1.9
38
88
0
110
19
12
20
47
1.81
22111--22241
26
5.0
26
86
2
181
14
15
26
43
1.85
22111--22241
53
2.5
53
89
0
208
14
15
26
43
1.85

Tables:   1

The End!