Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021029.1 Corchorus olitorius cultivar O-4 contig21062, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28367

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4544--4584
2
20.5
2
81
18
50
51
4
0
43
1.23
4654--4702
14
3.4
14
73
15
55
30
4
8
57
1.47
4647--4709
29
2.2
29
97
0
117
33
3
12
50
1.56
12165--12253
32
2.8
31
83
10
99
51
28
11
8
1.67
16343--16389
6
7.8
6
100
0
94
17
17
17
48
1.81
22314--22367
21
2.5
22
88
5
76
42
7
9
40
1.65
22487--22548
27
2.3
26
79
20
74
43
8
1
46
1.42
26649--26717
34
2.0
34
94
0
120
21
24
11
42
1.86
28312--28359
2
24.0
2
100
0
96
50
0
0
50
1.00

Tables:   1

The End!