Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021031.1 Corchorus olitorius cultivar O-4 contig21064, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42830

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3484--3679
99
2.0
98
97
1
374
19
31
14
34
1.92
4857--4909
22
2.4
22
84
6
72
73
15
3
7
1.20
4858--4909
11
4.7
11
77
17
54
73
15
3
7
1.21
13712--13750
16
2.4
16
91
8
62
12
7
12
66
1.43
23938--23986
20
2.5
20
89
0
71
30
10
16
42
1.81
27548--27572
13
1.9
13
100
0
50
0
8
0
92
0.40
27552--27577
11
2.4
11
100
0
52
0
7
0
92
0.39
27544--27579
15
2.3
16
90
4
56
0
13
0
86
0.58
31847--31879
2
16.5
2
93
0
57
48
3
0
48
1.17
38496--38561
18
3.6
19
80
8
57
36
24
9
30
1.86
38532--38569
18
2.2
17
95
4
67
44
21
5
28
1.73
39696--39766
26
2.7
27
84
2
90
19
14
23
42
1.88
40190--40217
14
2.0
14
100
0
56
35
21
7
35
1.81
42140--42168
13
2.1
14
93
6
51
65
0
31
3
1.09
42271--42415
72
2.0
72
95
0
263
29
4
19
46
1.68

Tables:   1

The End!