genome.fa.s21032.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021032.1 Corchorus olitorius cultivar O-4 contig21065, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  143401

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--144	73	2.0	72	94	1	252	30	4	18	46	1.68
1571--1882	40	7.8	40	90	1	419	19	27	19	33	1.96
10951--11275	163	2.0	163	97	0	614	27	11	25	35	1.90
16794--16904	22	4.8	23	73	15	95	38	9	13	37	1.78
20089--20143	21	2.6	21	85	0	65	18	49	20	12	1.79
25570--25625	21	2.7	21	80	0	58	37	16	8	37	1.80
26118--26168	25	2.0	25	100	0	102	35	13	11	39	1.82
26112--26165	25	2.3	23	87	12	83	37	11	12	38	1.79
26970--27015	24	1.9	24	86	0	65	17	41	10	30	1.84
31221--31264	21	2.0	23	86	8	65	15	0	9	75	1.05
36866--36913	22	2.2	22	81	7	53	18	25	10	45	1.81
48735--48768	3	11.3	3	100	0	68	0	35	0	64	0.94
49572--49627	30	1.9	28	85	7	76	55	0	21	23	1.44
50013--50144	25	5.3	25	91	3	212	14	15	33	36	1.88
50728--50766	20	2.1	19	85	9	53	17	5	35	41	1.72
51646--51712	3	22.3	3	100	0	134	32	0	0	67	0.91
54429--54471	18	2.4	18	92	3	70	9	20	0	69	1.15
57583--57626	21	2.1	21	86	0	61	52	6	15	25	1.68
57743--57796	27	2.0	26	85	3	72	38	33	14	12	1.85
60629--60674	21	2.2	21	84	0	56	84	2	6	6	0.84
60807--60908	38	2.7	38	100	0	204	47	5	19	27	1.73
61890--61967	27	2.9	26	81	7	84	20	19	24	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64703--64765	30	2.1	30	85	5	83	20	17	19	42	1.89
64855--64946	41	2.3	41	86	1	123	22	17	14	45	1.84
65598--65734	74	1.9	73	81	4	168	42	5	10	40	1.64
86018--86103	43	2.1	40	87	8	120	38	24	4	32	1.76
90721--90918	38	5.1	38	85	8	256	33	16	16	33	1.91
90944--91021	21	3.6	21	68	10	57	53	5	17	23	1.63
91010--91069	21	2.8	22	78	16	72	46	3	23	26	1.68
90940--91108	42	4.0	42	85	6	193	49	3	21	25	1.65
91005--91166	39	4.2	39	83	10	185	48	2	23	25	1.64
91113--91169	17	3.4	17	67	13	55	54	1	22	21	1.54
91100--91222	33	3.6	33	90	2	192	49	0	22	26	1.55
91195--91228	18	1.9	17	94	5	59	41	0	26	32	1.56
91195--91228	17	1.9	18	88	5	52	41	0	26	32	1.56
91161--91264	53	2.0	54	81	9	126	49	0	19	30	1.55
91216--91308	36	2.6	34	85	6	123	51	2	15	31	1.55
91217--91308	35	2.6	35	87	1	130	52	2	15	30	1.55
91213--91318	35	3.0	34	81	8	124	52	1	16	28	1.54
91349--91425	33	2.3	34	84	10	97	50	5	18	25	1.67
93944--93969	11	2.4	11	100	0	52	7	15	7	69	1.35
94730--94771	15	2.7	15	92	3	66	11	9	14	64	1.50
95218--95284	26	2.5	27	78	4	73	43	10	10	35	1.73
95791--95832	15	2.7	15	92	3	66	11	9	14	64	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103068--103104	2	18.5	2	94	0	65	45	0	2	51	1.15
103512--103551	15	2.7	15	84	11	55	42	7	7	42	1.61
103512--103551	14	2.7	14	88	7	53	42	7	7	42	1.61
105084--105559	36	13.2	36	85	4	559	17	19	19	42	1.89
105084--105559	180	2.6	179	89	3	679	17	19	19	42	1.89
105475--105608	36	3.9	32	83	13	76	16	23	18	41	1.90
105855--106444	30	19.8	30	90	1	934	21	13	17	48	1.81
106732--106862	22	5.9	22	93	1	217	22	19	14	42	1.88
110726--110755	2	15.5	2	93	6	53	50	0	0	50	1.00
110765--110801	19	1.9	19	100	0	74	32	13	10	43	1.79
123069--123116	16	3.2	15	85	14	64	60	16	8	14	1.57
123273--123310	6	6.5	6	96	3	69	84	0	15	0	0.63
125378--125414	19	2.0	20	89	10	60	62	13	13	10	1.55
132182--132217	19	1.9	18	88	5	54	33	22	2	41	1.68
132586--132829	127	1.9	127	80	3	285	34	10	16	38	1.83
133395--133426	2	16.0	2	93	0	55	0	0	46	53	1.00
141477--141550	27	2.7	27	89	0	112	17	13	27	41	1.87
143198--143229	2	16.0	2	100	0	64	0	50	0	50	1.00

Tables:   1

The End!