Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021034.1 Corchorus olitorius cultivar O-4 contig21067, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37079

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66--145
29
2.7
29
88
3
106
40
12
18
28
1.87
2809--2945
74
1.9
72
87
6
204
30
4
14
50
1.62
3733--3800
21
3.2
21
66
15
59
50
13
5
30
1.65
3721--3801
42
1.9
42
94
0
144
46
14
7
30
1.72
3867--3982
56
2.1
57
93
3
200
40
2
24
32
1.69
4446--4476
1
31.0
1
100
0
62
100
0
0
0
0.00
10081--10110
7
4.3
7
100
0
60
0
60
0
40
0.97
16950--16977
2
14.0
2
100
0
56
50
0
0
50
1.00
18557--18581
9
2.8
9
100
0
50
44
20
0
36
1.52
20464--20534
37
1.9
37
91
0
115
36
9
18
35
1.84
23851--23884
14
2.4
14
100
0
68
41
29
5
23
1.78
24167--24206
17
2.4
17
83
8
55
37
15
20
27
1.92
33336--33426
27
3.4
27
73
8
78
20
14
24
40
1.90
33326--33413
26
3.3
26
68
4
68
22
12
23
40
1.88

Tables:   1

The End!