Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021038.1 Corchorus olitorius cultivar O-4 contig21071, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3422
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36


Found at i:3014 original size:27 final size:28

Alignment explanation


    Indices: 2947--3022  Score: 100
    Period size: 28  Copynumber: 2.8  Consensus size: 28

       2937 TTAGGGTCAC

                                 *      
       2947 CCAGGGGCATTTTGGTCATTTTCAAAAT
          1 CCAGGGGCATTTTGGTCATTTGCAAAAT

                                    *** 
       2975 CCAGGGGCATTTTGGTCATTTGC-GCGT
          1 CCAGGGGCATTTTGGTCATTTGCAAAAT

            *                    
       3002 TCAGGGGCATTTTGGTCATTT
          1 CCAGGGGCATTTTGGTCATTT

       3023 TAAGTTCACT


Statistics
Matches: 43,  Mismatches: 5, Indels: 1
        0.88            0.10        0.02

Matches are distributed among these distances:
  27   21  0.49
  28   22  0.51

ACGTcount: A:0.17, C:0.18, G:0.28, T:0.37


Consensus pattern (28 bp):   
CCAGGGGCATTTTGGTCATTTGCAAAAT
Done.