Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021040.1 Corchorus olitorius cultivar O-4 contig21073, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  148684

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
649--963
50
6.3
50
92
0
513
32
27
11
28
1.91
1019--1251
50
4.6
50
93
3
346
36
11
26
26
1.90
20705--20735
16
1.9
16
93
0
53
29
9
0
61
1.28
22066--22096
12
2.6
12
89
0
53
19
12
0
67
1.22
25888--25921
6
5.8
6
89
6
52
20
52
26
0
1.46
25886--25922
17
2.1
18
95
5
67
27
48
24
0
1.51
26349--26420
31
2.3
31
75
17
78
26
4
8
61
1.43
26877--26934
16
3.6
16
81
9
73
39
37
13
8
1.76
26877--26960
32
2.6
32
84
0
114
38
34
14
13
1.85
28054--28385
178
1.9
177
84
6
447
35
13
16
34
1.88
32391--32420
15
2.0
15
93
0
51
30
26
20
23
1.98
43078--43126
25
2.0
25
100
0
98
32
20
32
14
1.92
44261--44294
5
6.8
5
87
12
52
41
0
0
58
0.98
46756--46830
21
3.5
22
80
5
82
40
9
22
28
1.85
46756--46954
22
9.1
22
75
9
104
39
9
15
35
1.79
46828--46955
43
2.9
45
79
9
140
39
8
11
40
1.72
50748--50818
27
2.6
27
95
0
124
16
14
28
40
1.87
69819--69847
14
2.1
14
100
0
58
13
13
20
51
1.75
87778--87886
51
2.2
51
80
11
118
20
22
12
44
1.85
88398--88435
13
3.1
13
92
7
62
34
7
23
34
1.84
88617--88650
2
17.0
2
100
0
68
50
0
0
50
1.00
91638--91671
15
2.2
16
89
5
52
14
5
11
67
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96844--96898
21
2.6
21
91
0
83
16
47
21
14
1.82
100241--100270
15
1.9
16
93
6
53
13
10
10
66
1.44
101456--101503
11
4.4
11
89
0
69
10
33
39
16
1.83
108253--108361
51
2.1
51
100
0
218
33
27
7
31
1.84
113297--113331
18
1.9
18
88
0
52
17
31
8
42
1.79
115338--115372
17
2.0
18
94
5
63
45
5
8
40
1.58
116988--117013
2
13.0
2
100
0
52
50
0
0
50
1.00
121488--121531
17
2.7
16
80
13
54
9
9
9
72
1.28
125964--126028
34
1.9
34
93
0
112
24
16
29
29
1.97
129039--129075
17
2.2
17
90
0
56
21
35
5
37
1.77
140978--141008
2
15.5
2
100
0
62
48
0
0
51
1.00
144729--144778
21
2.4
21
93
6
84
28
20
26
26
1.99

Tables:   1

The End!