Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021041.1 Corchorus olitorius cultivar O-4 contig21074, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35154

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5835--5972
33
4.2
33
80
5
127
28
7
21
43
1.79
7788--7867
21
3.8
21
98
0
151
27
18
27
26
1.98
9614--9973
39
9.3
39
90
1
463
31
16
21
30
1.96
9987--10029
22
2.0
22
90
4
70
25
25
18
30
1.98
10271--10308
17
2.2
17
90
0
58
18
34
7
39
1.80
17749--17796
21
2.3
21
78
7
53
29
20
29
20
1.98
18462--18654
82
2.3
84
82
2
228
45
10
13
30
1.78
19764--19860
45
2.2
45
86
1
133
35
5
20
39
1.75
20958--20989
16
1.9
17
93
6
57
68
3
6
21
1.26
20954--20995
16
2.4
18
81
18
54
73
4
4
16
1.17
28580--28627
21
2.3
21
85
7
62
25
39
29
6
1.80
34386--34415
5
6.0
5
96
0
51
0
43
0
56
0.99

Tables:   1

The End!