Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021042.1 Corchorus olitorius cultivar O-4 contig21075, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45164

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2972--3030
28
2.1
28
93
0
100
32
8
20
38
1.83
3371--3434
3
21.7
3
96
3
121
32
0
0
67
0.91
4759--4800
16
2.7
16
88
3
59
54
0
40
4
1.21
5452--5493
15
2.7
15
78
14
50
2
42
2
52
1.27
10652--10701
26
1.9
26
100
0
100
16
34
20
30
1.94
13957--13989
10
3.3
10
91
0
57
87
12
0
0
0.53
14628--14684
28
2.0
28
89
0
87
21
29
17
31
1.96
15909--15948
21
1.9
21
84
0
53
70
0
7
22
1.12
16988--17053
24
2.7
24
80
15
73
30
9
3
57
1.45
17219--17262
13
3.6
13
76
17
58
56
11
2
29
1.46
17222--17273
23
2.3
23
96
0
95
57
7
1
32
1.38
17222--17285
23
2.8
23
88
2
58
60
7
1
29
1.34
18612--19376
136
5.6
136
90
2
1099
30
12
18
37
1.88
18962--19024
30
2.1
30
82
5
74
20
9
23
46
1.80
19094--19156
30
2.1
31
84
3
83
22
7
22
47
1.76
23054--23186
69
1.9
69
90
0
212
51
7
12
28
1.67
23740--23786
24
2.0
23
91
4
76
46
6
8
38
1.60
24662--24694
6
5.5
6
100
0
66
33
48
0
18
1.48
26868--26906
19
2.1
19
100
0
78
28
20
20
30
1.98
29167--29192
2
13.0
2
100
0
52
50
0
0
50
1.00
30049--30130
22
3.9
22
72
10
64
36
9
12
41
1.76
30072--30144
22
3.4
22
76
3
76
36
9
12
41
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36185--36236
24
2.2
24
82
6
61
21
23
5
50
1.70

Tables:   1

The End!