Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021043.1 Corchorus olitorius cultivar O-4 contig21076, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21479

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1045--1081
19
1.9
19
88
0
56
16
24
5
54
1.63
3466--3508
23
2.0
21
86
13
61
18
6
11
62
1.50
5220--5263
4
11.0
4
100
0
88
50
25
0
25
1.50
10651--10679
14
2.1
14
100
0
58
41
0
20
37
1.53
11793--11862
34
2.1
34
97
0
131
20
31
5
42
1.75
13993--14022
2
15.0
2
100
0
60
50
0
0
50
1.00
14138--14177
19
2.0
20
85
9
55
57
12
0
30
1.36
15303--15336
16
2.1
16
94
0
59
20
5
11
61
1.50
16192--16286
25
3.8
25
81
5
120
10
45
15
28
1.80
17121--17179
29
2.0
31
86
6
86
37
13
28
20
1.91
20918--20965
22
2.3
20
82
13
53
58
8
0
33
1.28

Tables:   1

The End!