Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021046.1 Corchorus olitorius cultivar O-4 contig21079, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48624

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
783--817
17
2.0
18
88
5
54
65
17
0
17
1.27
783--818
18
2.0
18
88
0
54
66
16
0
16
1.25
829--914
43
2.0
43
95
0
154
37
13
12
36
1.84
869--965
52
1.9
51
85
8
135
28
14
17
39
1.89
968--1080
40
2.8
40
90
1
165
23
15
17
42
1.88
12473--12624
15
10.7
14
69
14
82
23
30
3
42
1.70
12482--12611
27
4.7
27
67
5
71
23
30
2
43
1.67
12454--12624
42
4.1
42
96
1
292
22
30
2
43
1.68
14537--14580
3
14.7
3
95
0
79
0
34
0
65
0.93
15045--15478
217
2.0
216
97
0
823
24
13
14
48
1.78
22494--22541
5
9.6
5
100
0
96
81
0
0
18
0.70
23691--23760
37
1.9
36
82
8
88
55
17
7
20
1.64
26851--26900
25
2.0
25
96
0
91
38
12
10
40
1.76
30109--30279
84
2.0
84
97
0
324
33
16
11
38
1.84
33377--33439
27
2.3
28
78
5
76
65
1
33
0
1.03
33394--33472
33
2.5
31
77
15
90
64
2
30
2
1.20
33900--33939
6
6.7
6
94
0
71
2
0
12
85
0.71
35232--35271
16
2.5
16
79
0
53
37
30
17
15
1.90
36124--36161
19
2.0
19
100
0
76
31
5
31
31
1.80
36999--37028
12
2.5
12
94
0
51
73
0
23
3
0.98
46448--46570
61
2.0
60
87
1
174
34
13
14
38
1.85

Tables:   1

The End!