Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021048.1 Corchorus olitorius cultivar O-4 contig21081, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47800

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35--81
25
1.9
24
95
4
85
55
8
6
29
1.55
78--147
34
2.0
36
86
5
99
37
4
8
50
1.53
364--421
2
28.0
2
80
13
64
46
1
6
44
1.40
364--409
17
2.8
17
96
3
85
47
0
8
43
1.34
4072--4104
15
2.3
15
89
5
50
3
21
0
75
0.93
8687--8761
37
2.0
37
89
0
114
26
4
18
50
1.64
17240--17273
16
2.1
16
88
0
50
41
35
14
8
1.77
17927--18102
93
1.9
88
85
10
239
52
2
13
31
1.55
27013--27058
13
3.6
13
72
16
51
45
2
52
0
1.13
27882--27932
20
2.5
20
100
0
102
23
9
17
49
1.77
36141--36204
21
3.1
21
60
8
51
35
4
15
43
1.68
36219--36309
45
2.0
45
93
0
155
40
5
21
31
1.76
41254--41300
17
2.7
18
84
12
62
48
0
23
27
1.51
41834--41914
29
2.9
29
81
16
91
45
0
1
53
1.08
41866--41938
25
2.9
26
75
15
73
42
0
2
54
1.14
41840--41954
38
2.9
40
76
8
101
46
0
2
50
1.21
42016--42245
110
2.1
111
91
3
383
34
18
16
30
1.93
44020--44065
6
7.8
6
90
2
67
21
50
28
0
1.49
44467--44513
13
3.8
12
78
13
51
40
0
4
55
1.19
44633--44680
23
2.1
23
84
0
60
35
39
16
8
1.79
44670--44760
16
5.7
16
72
10
87
37
38
15
8
1.78
44670--44759
32
2.8
32
93
0
144
36
38
15
8
1.79

Tables:   1

The End!